Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03265 ATGTACTTTATGCTCCCTACAGCCATGCGTATCAAACCCTTTCTCCTTCTCCTCTTCATCTCAACTTCATCTGCTGCTGCAGCCACAGATACACTTCAAGAAGGTTCTTCACTTTCAGTAGAGAAACAAAGCGACATCCTCTTTTCATCCAATGGTGATTTTTCAGCTGGCTTCTTCCAAGTTGGTGAAAACGCCTTCTGCTTCTCCGTTTGCTTCACGCGCTCCAAACAACCCACCGTGGTGTGGATGGCCAACCGTGACGAACCTGTCAACGGCAAAGGCTCCTTCCTATCACTCTGGAAAAACGGCAACCTCGTTTTGACGGATGCCGGAGGAACCGTTATCTGGGAAACCGCCACTCTTTCCACCTCCCAACTTTATCTGAAGCTAAGAAACAACGGAAACCTCCTTCTCCTCAATTCCAAAGGCACCACCATTTGGCAAAGCTTCACTTCCCCAACCGACACCCTTCTACCAACGCAACCACTCACGGAGCGAGGCGGTCTCCTTTCTTCGAGAAGTGCAACGAACCATTCCTCGGGGTTCTACAAGCTTTACTTTGACAACGACAACGTTCTTCGCTTACTCTACAAAGGTAGCACATTTTCCAGCGTGTACTGGCCACCATCGTGGAAGCTTGCAATTGACATAGGCAGATCCACCTACAATGTAACCAAAACTGCTTCTTTAGATTCTTTTGGACAATTCACTTCCTCTGACGGGTTTCAATTTGTCTCCACGGATTATCCCAAAAAAGTTTACAGGATACTCAAGTTGGATTCTGATGGTAATTTGCGTTTGTATAGCTTCAACGAGGAGCGTAAGACGTGGGAGGTGACGTGGCAAGTTATTCCAGAACCGTGCACCATTCATGGAATTTGTGGAGCGAACAGCATGTGCAATCATGATCCCGTTATTGGAAGGACTTGCTATTGCTTGAAAGGGTTCAAGGTTAAGGATCCCAATGACTGGACTCAGGGCTGTGAGCCTGAATTTTCTCCTTCATATTTTTCTTGCAACAGTCGCCAGTCATTTGGTTTTCTCCATCTTCAAACCACGGAACTGTATGGCTACGACTGGAACGTGACACGGGTTTCGAGCTTTAAGGAATGCCTGAATATATGTCTGTCACTTTGCGATAAATGTGTAGCTTTTCAATTAAAGGTTAACGAGTTTTCTAGCTATAATTGTTACCCGAAAACGATGGCATTCAATGGACGGGATATTCCTGGTTTCATTGGAGAGATCTATCTAAAGTTGCCGAATTCGATTCTACGCTCGTCCACGAAGATTCTAAAGCATTCCCGGATGAATTGCTCCGTTGGTTTGTCTCAAAAGTTGAACAGGGTTTATCAGCCGCCAAAAAAAAACTCTACAATGAGTTTCTTGGTTTGGTTCGCTTGCGGGTTCGGAGTGTTTGAGTTTTCCACCATTTTCTTGGTGTGGTTCTTCTTGTTCAGAACAAGCAAGCAGCCTCACAGGCTGGATCAACAACACCACCTTCTGTCTGCCACAGGTTTTCAGAGGTTCACCTACGCAGAGCTAAAATCCGCGACAAAAGGGTTCAAAGAAGAGGTTGGGCGAGGAGCAGGCGGGGTTGTTTACAAGGGGACATTATATGATAACCGTGTTGCGGCTATTAAACGCTTAAACGAAGCTACTCAAGGGGAAGCTGAATTTTTGGCTGAAATAAGCACAATTGGTATGCTGAACCACATGAATCTGATTGACATGTGGGGGTATTGCGTTGAAGGGAAGCACAGGCTTTTGGTGTATGAGTACATGGAACATGGATCCTTAGCAGACAATCTCTTTGGCAACGGTCTTGATTGGAAGAAAAGGTTCAACGTTGCCGTGGGCACAGCCAAAGGTTTAGCTTACTTACACGAAGAGTGTTTGGAGTGGATTTTGCATTGCGACGTGAAGCCTCAAAACATTCTGCTTGACTCAGAGTTCCAACCCAAGGTAGCAGATTTTGGGTTGTCAAAACTTCTAAACAGAGACGAGCGTGGAAATTCTAGTTTTTCACGAATAAGAGGGACTCGAGGGTACATGGCTCCGGAGTGGGTTTACAATATGCGTATCACTTCTAAGGTGGATGTTTATAGCTATGGGATTGTGGTGTTGGAAATGGTGAGTGGAAGAAGCCCTGTGGCAATTCACAGTCTTGAGAACAAAGGGGACATGGATCACCATCGTCTGGTGACGTGGATAAGGGAGAAGATAAAGAATGCACCCACTTGTGCGTTTTGGATGGAGGAGATCATTGATCCCAAGTTAGAAGGAAACTTCGACGTTTCAGAAGTAGAGGTTTTGGTTAAAGTGGCTTTACAGTGCGTCCAAGATGACATGAATGAAAGACCATCCATGAGTCAAGTTGCAGAAATGCTTCTTGCCAACGAAAATAAACTCCTCTCTCCTTAG 2424 0.455 MYFMLPTAMRIKPFLLLLFISTSSAAAATDTLQEGSSLSVEKQSDILFSSNGDFSAGFFQVGENAFCFSVCFTRSKQPTVVWMANRDEPVNGKGSFLSLWKNGNLVLTDAGGTVIWETATLSTSQLYLKLRNNGNLLLLNSKGTTIWQSFTSPTDTLLPTQPLTERGGLLSSRSATNHSSGFYKLYFDNDNVLRLLYKGSTFSSVYWPPSWKLAIDIGRSTYNVTKTASLDSFGQFTSSDGFQFVSTDYPKKVYRILKLDSDGNLRLYSFNEERKTWEVTWQVIPEPCTIHGICGANSMCNHDPVIGRTCYCLKGFKVKDPNDWTQGCEPEFSPSYFSCNSRQSFGFLHLQTTELYGYDWNVTRVSSFKECLNICLSLCDKCVAFQLKVNEFSSYNCYPKTMAFNGRDIPGFIGEIYLKLPNSILRSSTKILKHSRMNCSVGLSQKLNRVYQPPKKNSTMSFLVWFACGFGVFEFSTIFLVWFFLFRTSKQPHRLDQQHHLLSATGFQRFTYAELKSATKGFKEEVGRGAGGVVYKGTLYDNRVAAIKRLNEATQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRLLVYEYMEHGSLADNLFGNGLDWKKRFNVAVGTAKGLAYLHEECLEWILHCDVKPQNILLDSEFQPKVADFGLSKLLNRDERGNSSFSRIRGTRGYMAPEWVYNMRITSKVDVYSYGIVVLEMVSGRSPVAIHSLENKGDMDHHRLVTWIREKIKNAPTCAFWMEEIIDPKLEGNFDVSEVEVLVKVALQCVQDDMNERPSMSQVAEMLLANENKLLSP 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03265 807 ProSiteProfiles Protein kinase domain profile. 520 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03265 807 PANTHER OS07G0415500 PROTEIN 14 798 - -
Vimu10g03265 807 FunFam Serine/threonine-protein kinase 595 804 - -
Vimu10g03265 807 FunFam S-receptor-like serine/threonine-protein kinase 489 594 - -
Vimu10g03265 807 Gene3D Phosphorylase Kinase; domain 1 486 594 - -
Vimu10g03265 807 ProSiteProfiles PAN/Apple domain profile. 339 429 IPR003609 -
Vimu10g03265 807 CDD STKc_IRAK 526 797 - -
Vimu10g03265 807 SMART blect_4 38 153 IPR001480 -
Vimu10g03265 807 ProSiteProfiles Bulb-type lectin domain profile. 23 151 IPR001480 -
Vimu10g03265 807 CDD PAN_AP_plant 338 421 - -
Vimu10g03265 807 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Vimu10g03265 807 SUPERFAMILY Protein kinase-like (PK-like) 496 797 IPR011009 -
Vimu10g03265 807 Pfam Protein kinase domain 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03265 807 Gene3D - 23 154 IPR036426 -
Vimu10g03265 807 Pfam D-mannose binding lectin 79 163 IPR001480 -
Vimu10g03265 807 SMART serkin_6 520 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03265 807 Pfam S-locus glycoprotein domain 249 319 IPR000858 GO:0048544
Vimu10g03265 807 PIRSF SRK 1 807 IPR024171 GO:0004674
Vimu10g03265 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 208 IPR036426 -
Vimu10g03265 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Vimu10g03265 807 Gene3D Transferase(Phosphotransferase) domain 1 595 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03265 Vimu-Chr10 42923519 42926299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03265 453 797 Receptor kinase-like Gene Family AT1G56120 40.000 2.25e-66 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu10g03265 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03265 - - gmx:100816469 1267.68