Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03264 ATGTCTCTGCAACTTTCATCTTCAGCAGTAGAAATCCTGCATCAAGGTTCATCCCTCTCAGTGGAGGGCCCCAACGATTTCATGCTCTCACCAAATGCCATCTTCTGTGCCGGTTTCTATGCAGTTGGCCAAAACGCATATTCATTCGCTGTTTGGTACGCCCAGTCCAACGGCGAAACCCAGGATGCAACCGTCGTATGGATGGCGAACCGTGACTACCCCGTTAACGGCAAGGGCTCCAAGCTTTCCCTTCTTCCCAACGGTAACCTCGCCTTAAGGGACGCCGACGAGTCCCACATTTGGTCAACAAACACCGTTTCACTGTCGTCTGTGCAACTGTTTCTCGACAGCACTGGCAACCTCGTTCTGCGTGAAACGAAGGGTGGCGGTGTCGTCTTGTGGCAGAGCTTTGATTTCCCTACGGACACGCTTTTGCCTCAACAAGTGTTCACGAGATACGCGAAGCTGGTCTCTTCCAGAAGCGAGAGTAACAAGTCCTCTGGTTTCTACTCCTTGTTCTTCGACAACGACAACGTTCTTCGTCTTCTTTACGATGGTCCTGAAGTTTCTGGCCTTTACTGGCCAGATCCATGGTTGGCCACTTGGAATGCTGGACGTTCAACTTACAACAACAGTAGAGTTGCGGTGATGGACACACTCGGCAATTTCAGTTCTTCAGATGATTTCTCTTTTTTGACATCCGATTATGGCACTCTGATCCAAAGAAGATTAGTGCTTGATCATGATGGAAACATTCGTGTTCATAGTCGCAGAAATGGTGGAGAGAAATGGTCTATTGCCTGGCAAGCCAAAGCAAGACCGTGTAGAATTCATGGTCTTTGTGGCCCTAACAGTTTGTGCTCTTACCACCAAAATTCTAGTGTGAAGTGCTCTTGCCTTCCCGGGTATAAGAGGAAGAATGATCACGATTGGTCTTTTGGATGTGAACCCAAATTCTCTACTCCTTGCAACAAAACACAGTCTCGGTTTTTGCGTATAAGCCGCGTGGAGTTATATGGCTATGACTATGGGATTTTGACAAATTACACTCTCCATCAGTGTCAGCAGTTATGCCTTCAATTATGCGACTGTAAAGGCATTCAGTATACATATGTCTTTGGCAGTGGCACTTATACTTGTTACCCCAAGTTGCAGCTGCGGAATGCGTATCAGACACCGTATTTCAACGCTGATTTGTACCTGAAACTTCCAGCAAATAGCTCATATTCTTTTGAAGGATCCACACATGAGCAGAGTCTTGATTGTTCTTCGAGTTTGAGCACGATGCAGCTTGAGAGAGCGTATGACATGAATCATGAGAACAGATATATCAAGTTCTTGCTTTGGTTTGTAGGAGGGTTGGGGGGATTGGAAGTTTTATGCATATTTGTGATTTGTTTTTTTCTGGTGAGAACAAGGGAGAGAAAGTATTCTGGTGTGGATAGACGGGTCTATGATTTGGCCTTGACTGGTTTCAGAAAGTTCAGTTATTCTGAACTGAAACAAGCGACGAAAGGGTTCCGTGAGGAGATAGGAAGGGGTGCAGGAGGGGTTGTATTCAAAGGCGTGTTGTTGGATCAAAGAGTTGCAGCTGTGAAGAGACTGAAGGATGCGAATCAAGGAGAAGAAGATTTCCTGGCAGAAGTAAGAAGCATTGGAAGGCTTAACCATATGAACTTGATTGAGATGTGGGGGTATTGTGCTGAGGGAAAACATAGACTGTTGGTGTATGAGTACATGGAGCTAGGGTCTCTAGCACAAAATATCGAGTCAGATGAACTAGACTGGACCAAGAGGTTTAACATAGCACTAGGTACAGCAAAAGGGTTGGCTTATGTTCACGAGGAGTGCTTGGAGTGGATTCTACACTGTGATGTAAAGCCCGAAAACATTCTTCTAGATTCTAACTATCATCCAAAGGTAGCGGATTTTGGGCTGTCAAAGCTGCGAAACAGAAATGATACTAGTACATACTCTAGTTTTTCACGGATACGAGGAACGAGAGGTTACATGGCTCCTGAGTGGGTTTTGAACCAACGAATCACGTCCAAAGTTGACGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTGACCGGAAAGAGTGCAACAAAGGATGTTGATGACACTGATGATGGAGTGGAGAAAGAGCATCTGAGCATGGTGGCGTGGCTTAAAGATAAGCAGAAAAATGGATGCGGTTGGGTTGGTGAAATATTGAAACCCGATGTAAAAGGAGTTTATGAGGAGGATAAGATCGAAGCTTTGGTGAGAGTGGCTCTGCAATGCGTTGAAGAAGAAAAGGAGAAGAGACCCACAATGAGTCAAGTAGTAGAAATGCTTCTCAAATGTAAACGCGAAGATGATAATCTGCATCATCTCTCGTAA 2388 0.451 MSLQLSSSAVEILHQGSSLSVEGPNDFMLSPNAIFCAGFYAVGQNAYSFAVWYAQSNGETQDATVVWMANRDYPVNGKGSKLSLLPNGNLALRDADESHIWSTNTVSLSSVQLFLDSTGNLVLRETKGGGVVLWQSFDFPTDTLLPQQVFTRYAKLVSSRSESNKSSGFYSLFFDNDNVLRLLYDGPEVSGLYWPDPWLATWNAGRSTYNNSRVAVMDTLGNFSSSDDFSFLTSDYGTLIQRRLVLDHDGNIRVHSRRNGGEKWSIAWQAKARPCRIHGLCGPNSLCSYHQNSSVKCSCLPGYKRKNDHDWSFGCEPKFSTPCNKTQSRFLRISRVELYGYDYGILTNYTLHQCQQLCLQLCDCKGIQYTYVFGSGTYTCYPKLQLRNAYQTPYFNADLYLKLPANSSYSFEGSTHEQSLDCSSSLSTMQLERAYDMNHENRYIKFLLWFVGGLGGLEVLCIFVICFFLVRTRERKYSGVDRRVYDLALTGFRKFSYSELKQATKGFREEIGRGAGGVVFKGVLLDQRVAAVKRLKDANQGEEDFLAEVRSIGRLNHMNLIEMWGYCAEGKHRLLVYEYMELGSLAQNIESDELDWTKRFNIALGTAKGLAYVHEECLEWILHCDVKPENILLDSNYHPKVADFGLSKLRNRNDTSTYSSFSRIRGTRGYMAPEWVLNQRITSKVDVYSYGIVVLEMVTGKSATKDVDDTDDGVEKEHLSMVAWLKDKQKNGCGWVGEILKPDVKGVYEEDKIEALVRVALQCVEEEKEKRPTMSQVVEMLLKCKREDDNLHHLS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03264 795 Gene3D - 7 138 IPR036426 -
Vimu10g03264 795 Pfam Protein kinase domain 509 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03264 795 SMART blect_4 19 140 IPR001480 -
Vimu10g03264 795 SMART ntp_6 325 403 IPR003609 -
Vimu10g03264 795 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 790 - -
Vimu10g03264 795 ProSiteProfiles Bulb-type lectin domain profile. 4 136 IPR001480 -
Vimu10g03264 795 Gene3D Transferase(Phosphotransferase) domain 1 580 793 - -
Vimu10g03264 795 FunFam Serine/threonine-protein kinase 141 268 - -
Vimu10g03264 795 CDD B_lectin 23 140 IPR001480 -
Vimu10g03264 795 ProSiteProfiles PAN/Apple domain profile. 323 404 IPR003609 -
Vimu10g03264 795 Pfam S-locus glycoprotein domain 225 306 IPR000858 GO:0048544
Vimu10g03264 795 Gene3D Phosphorylase Kinase; domain 1 471 579 - -
Vimu10g03264 795 PIRSF SRK 1 793 IPR024171 GO:0004674
Vimu10g03264 795 CDD STKc_IRAK 511 783 - -
Vimu10g03264 795 FunFam S-receptor-like serine/threonine-protein kinase 474 579 - -
Vimu10g03264 795 SUPERFAMILY Protein kinase-like (PK-like) 487 782 IPR011009 -
Vimu10g03264 795 ProSiteProfiles Protein kinase domain profile. 505 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03264 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vimu10g03264 795 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Vimu10g03264 795 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 188 IPR036426 -
Vimu10g03264 795 PANTHER OS07G0415500 PROTEIN 7 783 - -
Vimu10g03264 795 SMART serkin_6 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03264 795 Pfam D-mannose binding lectin 64 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03264 Vimu-Chr10 42911796 42914183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03264 454 781 Receptor kinase-like Gene Family AT5G20050 38.936 1.23e-62 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu10g03264 Pkinase 5.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03264 - - gmx:100792388 1299.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03264 10 42911796 42914183 Vimu10g03264 10 42911796 42914183 ECH