Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03258 ATGGATGAGGATTTTTCGTTTCTACAACCTCTGGATCTTATCACAAAGGAGCCGAATGAGCTACACAATATAGTAAAAGCCAAAAAGGAAAATCTAAGTCAACATAAATCCGAATCGAATAAAATAGTGAATGGGTCGACTCACGACAACGCAAGGAGGGAACATGTTCAGGAAAGAGAGAAGGAGAGGAAAGAAAAGGAAAATGAACAGAGACTGGAAAAAATAAGGTTAGAAAAAGAGAAGGAGCAACCAAAGGATGAATATAAAGAAACACAACATACCGATCAAAACCATACAGAGAAACACGAAGATAAGACTACTGTTGAAAATCTAAACAATAGAGCGTATGGAGGGCCTGAGCCAATGGAGATTTCACAGAGCCCCATGTCGTCGCCTAATGATACTCCATGTCATGATGTAAAAATTTTGAAAGGCCATTCGTCGGAGGTTTTTGCCTGTGCTTGGAATCCATCAGCTCCACTTCTTGCGTCTGGATCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGACCTTGTGACTCTGGTGTGCAAAATGAACCAGTAAATGTTGTCGTGCTGCAGCACTTTAAAGAAAGCACCAATGAAAAAAGCAAGGATGTGACTACACTCGATTGGAATCTAATATGTTTTGCTATGGTTTTTATTACAAAGGGAGACGGAACACTATTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGTAGAGATGGTTCATTAGGGGAGTTGAATAGTACACTAAACAAGCACAAAGGTCCAATATTTTCCTTGAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTGTGGAATATAAAGACTGGGGAATGGAAACAACTATTTGAATTTCACACCGGTCCAACTCTTGATGTTGATTGGCGAAACAATGTTACATTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGGGAGAATAGACCAGTCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCTTTACTGGCTTCATGCTCCGATGATCACACTGCAAAAATATGGAGTTTAAAGCAGGATAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATCTATACAATTCGATGGAGCCCTACAGGCCCTGGTACCAACAATCCCAATCAGCAGTTGGTGCTAGCAAGGGATCCTGTATATTCCGTTGCATTCAGTCCTAATGGGGAGTATCTGGCCAGTGGCTCCATGGATAGATTTGTGCATATATGGTCCGTGAAGGAAGGCAAGATTGTAAAAACATACACTGGAAAAGGTGGGATATTTGAAGTTAATTGGAACAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTCCGAATGTAA 1455 0.4021 MDEDFSFLQPLDLITKEPNELHNIVKAKKENLSQHKSESNKIVNGSTHDNARREHVQEREKERKEKENEQRLEKIRLEKEKEQPKDEYKETQHTDQNHTEKHEDKTTVENLNNRAYGGPEPMEISQSPMSSPNDTPCHDVKILKGHSSEVFACAWNPSAPLLASGSGDSTARIWKIADGPCDSGVQNEPVNVVVLQHFKESTNEKSKDVTTLDWNLICFAMVFITKGDGTLLATGSYDGQARIWSRDGSLGELNSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTGEWKQLFEFHTGPTLDVDWRNNVTFATCSTDKMIHVCKIGENRPVKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNNPNQQLVLARDPVYSVAFSPNGEYLASGSMDRFVHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVLDFRM 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03258 484 CDD WD40 140 477 - -
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 449 IPR001680 GO:0005515
Vimu10g03258 484 MobiDBLite consensus disorder prediction 47 109 - -
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 374 - -
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 445 - -
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 176 - -
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Vimu10g03258 484 MobiDBLite consensus disorder prediction 26 134 - -
Vimu10g03258 484 FunFam WD40 repeat-containing protein HOS15 131 413 - -
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 294 - -
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 381 IPR001680 GO:0005515
Vimu10g03258 484 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Vimu10g03258 484 PANTHER WD40 REPEAT PROTEIN 412 483 IPR045183 GO:0003714|GO:0016575
Vimu10g03258 484 SMART WD40_4 443 481 IPR001680 GO:0005515
Vimu10g03258 484 SMART WD40_4 205 245 IPR001680 GO:0005515
Vimu10g03258 484 SMART WD40_4 250 289 IPR001680 GO:0005515
Vimu10g03258 484 SMART WD40_4 401 440 IPR001680 GO:0005515
Vimu10g03258 484 SMART WD40_4 136 175 IPR001680 GO:0005515
Vimu10g03258 484 SMART WD40_4 333 372 IPR001680 GO:0005515
Vimu10g03258 484 SMART WD40_4 292 330 IPR001680 GO:0005515
Vimu10g03258 484 Gene3D - 131 484 IPR015943 GO:0005515
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 176 IPR001680 GO:0005515
Vimu10g03258 484 Pfam WD domain, G-beta repeat 253 289 IPR001680 GO:0005515
Vimu10g03258 484 Pfam WD domain, G-beta repeat 140 175 IPR001680 GO:0005515
Vimu10g03258 484 Pfam WD domain, G-beta repeat 414 440 IPR001680 GO:0005515
Vimu10g03258 484 Pfam WD domain, G-beta repeat 335 372 IPR001680 GO:0005515
Vimu10g03258 484 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515
Vimu10g03258 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 245 IPR001680 GO:0005515
Vimu10g03258 484 SUPERFAMILY WD40 repeat-like 136 482 IPR036322 GO:0005515
Vimu10g03258 484 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Vimu10g03258 484 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Vimu10g03258 484 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Vimu10g03258 484 Coils Coil 52 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03258 Vimu-Chr10 42867010 42874065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03258 228 451 Eukaryotic Initiation Factors Gene Family AT2G46290 23.431 1.42e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03258 K04508 - gmx:100783690 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03258 10 42867010 42874065 Vimu10g03258 10 42867010 42874065 ECH