Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03256 ATGGAGACGCGTGCTGGGGCAAAGAGAAAGAGAAATGAAGCTGTTGTGGTGGTGGAAAAACAACACCCCAAGATGCATAGGGTTGTATTGGGTGAACTTCCCAATCTACCAAACCTTATTGTCCCCGAAAATCAAAATCTGCCCAAACAGAAAGTTTCAAGTTGGAAAAATCCCAACACCAAGAAACTATCTTCTCCTCAGATAGACCAACATTATGTATCTGACATCTATGAACATCTTCTTGCAATGGAGAAGAAGAAAAGACCCATAGTTAACTACATGGACAAAGTTCAGTTGGTGCTTACAGCAAACATGAGACAAATATTGGTGGATTGGTTAGTAGATGTTGCTGTGGAGTACAAGCTTCTCTCTGAAACTCTTCATCTTTGTGTGTCATTAATAGATAGGTTTTTATCAGTTAGTCCTGTGACAAAAACCAAGCTTCAGTTAGTAGGTGTTTCTTCCATGCTTCTTGCCTCGAAGTACGAGGAAACTAAACCGCCCAGCGTGGGCAAATTTTGCCGCATCACTGATAACACTTTTGAAAAGAAAGAGGTTGTAAAGATGGAAGCTGAAATACTTGAATCTCTAAACTTTGAAATTGGCAATCCTACTGCAATCACTTTTCTAAAGAGATTTTTGAGTGTTGCTTCTGCCAACGAAAAAACACCAAATTTGAAGATTGAGTTCCTGAGCTTCTACCTTGCTGAGCTAAGTTTGTTGGATTATAGTTGTCTAAGATTCTTGCCTTCCATTATAGCTGCATCTGCTTTATTTCTTGCCAGGTTTATTATCTCTCCCAAAATGCATCCTTGGAGTTTTTCCCTGAGTGAATGGTCAGGTTACAAACCATTTGAGTTGAAAGCTTGTGTTTTCACTTTGCATGACTTGTATTTTTCAAGAAAGGCAGCATCCTTCCGATCTGTTAGGGATAAATATAAACAGTGCAAGGTAAATTCAAGTGTGTGGCAAACCTGTCATCTCCTCCACATGTACCAAGTCATTACTTTGAAGATTGGTGATGCAGTGACAATTCCTTGA 1041 0.3948 METRAGAKRKRNEAVVVVEKQHPKMHRVVLGELPNLPNLIVPENQNLPKQKVSSWKNPNTKKLSSPQIDQHYVSDIYEHLLAMEKKKRPIVNYMDKVQLVLTANMRQILVDWLVDVAVEYKLLSETLHLCVSLIDRFLSVSPVTKTKLQLVGVSSMLLASKYEETKPPSVGKFCRITDNTFEKKEVVKMEAEILESLNFEIGNPTAITFLKRFLSVASANEKTPNLKIEFLSFYLAELSLLDYSCLRFLPSIIAASALFLARFIISPKMHPWSFSLSEWSGYKPFELKACVFTLHDLYFSRKAASFRSVRDKYKQCKVNSSVWQTCHLLHMYQVITLKIGDAVTIP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03256 346 Gene3D - 75 319 - -
Vimu10g03256 346 Gene3D - 89 202 - -
Vimu10g03256 346 SMART Cyclin_C_2 204 326 IPR004367 -
Vimu10g03256 346 Pfam Cyclin, C-terminal domain 204 320 IPR004367 -
Vimu10g03256 346 SUPERFAMILY Cyclin-like 65 201 IPR036915 -
Vimu10g03256 346 PANTHER CYCLINS 58 315 IPR039361 -
Vimu10g03256 346 FunFam G2/mitotic-specific cyclin 89 201 - -
Vimu10g03256 346 SMART cyclin_7 111 195 IPR013763 -
Vimu10g03256 346 SMART cyclin_7 208 296 IPR013763 -
Vimu10g03256 346 SUPERFAMILY Cyclin-like 204 317 IPR036915 -
Vimu10g03256 346 FunFam Cyclin superfamily protein, putative 202 273 - -
Vimu10g03256 346 Pfam Cyclin, N-terminal domain 75 201 IPR006671 -
Vimu10g03256 346 ProSitePatterns Cyclins signature. 106 137 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03256 Vimu-Chr10 42858114 42859766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03256 3 317 Core Cell Cycle Gene Families AT5G43080 53.395 8.45e-113 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03256 K06627 - gmx:100786875 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03256 10 42858114 42859766 Vimu10g03256 10 42858114 42859766 ECH