Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03251 ATGAGTGCTCCGTCGCGAGAAGAGGGGTCGAAAGAAGAGGAGAAAGACGAGGAGGCGAACCGGCTTCTAGAGGAAGCAGGAGCGGTATCCTCATCGGAAGAAGATGTGGCATACGAAGCGGGAGAGAAGATCCTGGTGGCGGATTTCGATTTTGACACAGTGGACGATGCGACAGTTCCTCCTTTCTCATGGAAGAAGCTGTGGCTGTTCACTGGGCCTGGGTTCTTGATGAGCATAGCTTTTTTGGATCCGGGGAATCTCGAGGGGGATCTCCAGTCTGGGGCCATCGCGGGCTACTCGCTCCTCTGGCTCTTGATGTGGGCCACCGTCATGGGCCTCTTGATCCAGCTTCTGTCCGCCAGGGTCGGGGTCGCCACGGGCCGCCACCTCGCTGAGCTCTGCAGGGATGAGTATCCCCATTGGGCCCGCCTTGTGCTCTGGTTCATGGCCGAGCTGGCCCTGATTGGCGCCGACATTCAAGAGGTAATTGGAAGTGCCATCGCCATCCAAATTCTTAGCCGAGGCTTCCTCCCTCTCTGGGTTGGAGTTCTAATCACTGCTTCCGACTGCTTTTTCTTTCTATTTCTTGAGAACTATGGTGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTTCTATTATGGGTCTTTCATTTGCCTGGATGTTTGCTGATGCAAGACCTAATAGACAAGAGCTTTTAATGGGTATTTTGGTTCCGAGACTAGGCTCAAAAACAATTCGTCAAGCTGTGGGTGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTTCAATCAAGGAAGGTTGATCCTAATAAGAAAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATCGAGTCATCAGCTGCACTTTCAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAGGCAAAAGACATAGGACTCGTCAATGCAGGGCAATATCTTGAAGAAAAGTATGGAGGAGGAGTTTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGCCAGAGTAGCACCATTACTGGCACATACGCTGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGATGAGAGCGTTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATAGTTTTTAATAGATCAGAAGCATCCTTGGACATTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTTTGATTCCCCTCCTCACATTGGTCTCCAAAGAGCAGCTCATGGGAACCTTTAGAGTTGGACCTGTTCTTGAGAGAGTAGCATGGACTGTTGCTGGACTGATAATAGTGATTAATGGGTATCTCTTGTTAGATTTCTTCATTTCTGAAGTGAATGGCGTCTTACTTGGTCTTTTAGCCTGCTCCTGCACGACAGCCTATATTGCGTTCATAGTATATTTGGTTTCACAGAGCGGTATTCTTCCTTCTGCATGGGTTAATCGTCTTCCCAAGGGATTTTCTTCAACTGGGAATTAA 1581 0.4725 MSAPSREEGSKEEEKDEEANRLLEEAGAVSSSEEDVAYEAGEKILVADFDFDTVDDATVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCRDEYPHWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGFLPLWVGVLITASDCFFFLFLENYGVRKLEAAFAVLISIMGLSFAWMFADARPNRQELLMGILVPRLGSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPNKKGRVQEALNYYSIESSAALSVSFMINLFVTTVFAKGFYGTKQAKDIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIVPTIIVAIVFNRSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEQLMGTFRVGPVLERVAWTVAGLIIVINGYLLLDFFISEVNGVLLGLLACSCTTAYIAFIVYLVSQSGILPSAWVNRLPKGFSSTGN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03251 526 Pfam Natural resistance-associated macrophage protein 88 449 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 NCBIfam Nramp family divalent metal transporter 72 442 - -
Vimu10g03251 526 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 21 504 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 Hamap Divalent metal cation transporter MntH [mntH]. 53 475 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 PRINTS Natural resistance-associated macrophage protein signature 146 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 PRINTS Natural resistance-associated macrophage protein signature 250 273 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 PRINTS Natural resistance-associated macrophage protein signature 357 376 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 PRINTS Natural resistance-associated macrophage protein signature 201 222 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 PRINTS Natural resistance-associated macrophage protein signature 385 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 PRINTS Natural resistance-associated macrophage protein signature 419 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 PRINTS Natural resistance-associated macrophage protein signature 176 195 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g03251 526 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 65 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g03251 526 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03251 Vimu-Chr10 42834592 42837703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03251 7 506 Inorganic Solute Cotransporters AT1G47240 78.287 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03251 K21398 - gmx:100791117 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03251 10 42834592 42837703 Vimu10g03251 10 42834592 42837703 ECH