Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03229 ATGTTAACCACCGTCAACAACGACAACTCCTTCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGCCGAATTCTCCACACCGTCTTCCGAGAGCCGCCGCCGCCGCCGCCTCCTCATCGCATGCGCAGCCGACAATTCCGACGAATTCATTCCCCACCTCGTTCTCAACCTCCATTCCTGTTCCATTGAGGACCAGAAACAAGCCACCATGGAAATCAGGCTACTTGCCAAGAACAAGGAAGAGAACCGCGTCAAGATCGCACAAGCCGGCGCGATTAAACCCTTGGTTTCGCTTCTATCGTCCTCGTCTGACCTTCAGCTTCAGGAGTACGTTGTGACCGCGATTCTCAATCTCTCGCTCTGCGACGAGAACAAAGACCTGATCAATTCCTCGGGAGCGGTGAAGCCTCTAGTGGGAGCGCTGGAGACGGGGACGCCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTCCGGCTCTCCCGGAGAGAGGAGGACAAGGTTGCGATAGGGAGGGCGGGGGCGATTCCGCCTCTGGTGAAGCTTCTAGAAGGTGGGGGTTTGCGCGGGAAGAAGGACGCGGCGACGGCGCTGTACGCGGTGTGTTCGGCTAAGGAGAACAAAGTGAGGGCGGTGAGGGCGGGGGTTATGAGGGCGCTGGTGGAGCTGATGGCGGACTTGGGGTCGAGCATGGTGGACAAGGCGGTGTACGTGGTGAGCGTGGTTGTTGGGGTGGTGGAAGGGAGGGCGGCGCTGGTGGATGAAGGGGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTGGGGACGCAGAGGCAGAAGGAGATCGCCGTCGGGGTTCTGTTGCAGATTTGCGAGGAGAGTTGGGTGTACCGTACTATGGTGGCCCGCGAAGGAGCGATTCCACCCCTCGTTGCTTTCTCACAATCACACTCACACTCCAATCGCCCCAGACAGAAGGCTGAGAAACTCATAGAGCTTCTACGGCAACCGAGATCCGGCAATGGCGCTGGTCGTTCCTAG 1020 0.5951 MLTTVNNDNSFSAFSDCNSDRSAEFSTPSSESRRRRRLLIACAADNSDEFIPHLVLNLHSCSIEDQKQATMEIRLLAKNKEENRVKIAQAGAIKPLVSLLSSSSDLQLQEYVVTAILNLSLCDENKDLINSSGAVKPLVGALETGTPTAKENAACALLRLSRREEDKVAIGRAGAIPPLVKLLEGGGLRGKKDAATALYAVCSAKENKVRAVRAGVMRALVELMADLGSSMVDKAVYVVSVVVGVVEGRAALVDEGGIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSHSNRPRQKAEKLIELLRQPRSGNGAGRS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03229 339 Pfam Armadillo/beta-catenin-like repeat 165 198 IPR000225 GO:0005515
Vimu10g03229 339 Pfam Armadillo/beta-catenin-like repeat 123 162 IPR000225 GO:0005515
Vimu10g03229 339 Pfam Armadillo/beta-catenin-like repeat 81 120 IPR000225 GO:0005515
Vimu10g03229 339 SUPERFAMILY ARM repeat 47 312 IPR016024 -
Vimu10g03229 339 Gene3D - 37 242 IPR011989 -
Vimu10g03229 339 Gene3D - 243 328 IPR011989 -
Vimu10g03229 339 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 134 IPR000225 GO:0005515
Vimu10g03229 339 SMART arm_5 245 285 IPR000225 GO:0005515
Vimu10g03229 339 SMART arm_5 163 203 IPR000225 GO:0005515
Vimu10g03229 339 SMART arm_5 122 162 IPR000225 GO:0005515
Vimu10g03229 339 SMART arm_5 204 244 IPR000225 GO:0005515
Vimu10g03229 339 SMART arm_5 80 121 IPR000225 GO:0005515
Vimu10g03229 339 PANTHER U BOX DOMAIN-CONTAINING 51 328 - -
Vimu10g03229 339 FunFam RING-type E3 ubiquitin transferase 41 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03229 Vimu-Chr10 42720946 42722143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03229 26 338 U-box Gene Family AT2G23140 47.923 2.58e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03229 - - gmx:100782449 432.18