Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03225 ATGGATGATCTTTCGTCCAGCCTTCTGTGCCAAGAAAACGATACGTGTTTGGAAGAAGGAGGTGATGCATTAGAATACCAATTGGTTGGATCACGGCATGATTGTGGGGTTTCGGAGGAAGAGTATGTGGGGATTTTGGTTGAGAGAGAGATCGTTCTCGGGTTCAGAAGGGACGAAAGTTTGGTGTTTGGGGACTGGATGAAGCGTGCACGCTTGGAGGCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGTTTTCGCTTCGAAACGGCTTATTTGTCAGTCACATACTTCGATCGATTTCTTTCTAGACGGTCCATTGATAGTGAAAAGTGGTGGGCAATTCGGTTGCTTTCAATTGCATGTCTCTCTTTGGCTGCAAAGATGGAGGAGTGCAATGTGCCAGAGCTATCAGAGTTCAAATTGGAAGACTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTCTTGGTGCTCAGCACATTGGAGTGGGAAATGGGTATCATCACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGTAAAGAATCTCCACCAAGTCCTACTTTTTCCAAGACCATGCAACTCATCTTTACCACTATGAAAGAGGTCAATTTAATGGATCAAAAACCATCAGTTATTGCAGCGGCTGCTACATTAGTGGCAATGGATCAAAAAATGACGATGGAGGCGGTGGAGTTGAAGATGAGTTCAATTCCTCAACATAGGCTTCTAGAACCTAAAGATGTATTCGAGCACTACAATCTAATTCAAAGATTACAGGAGGAGGAGACCAAAAGGGACACGCACACGCCAATCGACGTGACTGACAGCTCCAGAGTTACTTCTTCCGCAGCAATGGCAAAGAGAAGAAGACTCACATTCAGTGATGAAGGAAGTAGTCATGGGAAGGGACAGGGCTAG 936 0.4412 MDDLSSSLLCQENDTCLEEGGDALEYQLVGSRHDCGVSEEEYVGILVEREIVLGFRRDESLVFGDWMKRARLEAINWILKTRATLGFRFETAYLSVTYFDRFLSRRSIDSEKWWAIRLLSIACLSLAAKMEECNVPELSEFKLEDYSFEGKVIQKMELLVLSTLEWEMGIITPFDFLSYFITKFCKESPPSPTFSKTMQLIFTTMKEVNLMDQKPSVIAAAATLVAMDQKMTMEAVELKMSSIPQHRLLEPKDVFEHYNLIQRLQEEETKRDTHTPIDVTDSSRVTSSAAMAKRRRLTFSDEGSSHGKGQG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03225 311 SUPERFAMILY Cyclin-like 34 168 IPR036915 -
Vimu10g03225 311 CDD CYCLIN_AtCycD-like_rpt1 70 166 - -
Vimu10g03225 311 CDD CYCLIN_AtCycD-like_rpt2 171 261 - -
Vimu10g03225 311 MobiDBLite consensus disorder prediction 267 311 - -
Vimu10g03225 311 FunFam Cyclin-D5-1 170 258 - -
Vimu10g03225 311 Gene3D - 164 277 - -
Vimu10g03225 311 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
Vimu10g03225 311 PANTHER CYCLINS 40 245 IPR039361 -
Vimu10g03225 311 SMART Cyclin_C_2 171 290 IPR004367 -
Vimu10g03225 311 SMART cyclin_7 76 162 IPR013763 -
Vimu10g03225 311 Gene3D - 64 163 - -
Vimu10g03225 311 Pfam Cyclin, N-terminal domain 69 168 IPR006671 -
Vimu10g03225 311 FunFam Cyclin-D5-1 66 169 - -
Vimu10g03225 311 SUPERFAMILY Cyclin-like 154 243 IPR036915 -
Vimu10g03225 311 Pfam Cyclin, C-terminal domain 171 271 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03225 Vimu-Chr10 42676253 42677638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03225 8 243 Core Cell Cycle Gene Families AT4G37630 37.698 1.32e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03225 K18811 - gmx:100798728 544.273