Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03223 ATGGCTCCTACGCCTCAGCCTCCACGAATCGACATTGAACCTGAATATTGCCCTCAAGCGGTGAGGCAATGGTACTACCTCGCATCACTGCCAAGTAACAGGAGAGAATCTTCATTAAGCAGGGATCTCTCCTTAGAAGTTAAGAAACATCTTCGTTATCTGGGTTGGAAATTTTGGCATGTTGACAAGAAAGATAAGTGGGAGCTGCGTTACACATCACCCATCACTGGCAAGAATTACATTTCTCTCGCAAGGGCATGTAAAGCTTGCATAGAAGAGGGAGGCTGCAATGAAAACCCTCAAGATTTTCAAGAAAACAACGTTCTTCTCGAATATCCCATTTCTTCTCAACCAACAAGAGAATCCAAAAAGAGAACTAGGGTGTGCAAGAAAAGGGAAAAGGATGATCACGATGATGAGTTGGGAGAAGGCTCTAGTTCTACGAATGGTAGAAGAGGTAAGGCTGCGCTGTCGATCAAAACAACGACGCAAGAGGGTGAGGCGGCACCAGTTTCTAAGTCTTCACAACACCACAGTGGAACTCTTATCCCTTGGTTGATAGAAAACGGTGCTGTGGGTTTAGATTCCGTGGTAATCTGCCATGGTGCAAATGGCGTGGTCAAGAAAGGGAAGCTGTCGTACTGTGGCATATGCTGTGATTGCTGTAACAAGTATTTTTCTCCCACTCGCTTTGAGGCTCATGCCAGGTGTCAAAGGCACAGACCAAATTCTAGCATTTTCTTGGAAGATGGAAGGTCATTGTTAGATTGTAAAAACGAGGCCCTAAGTTCTCAGCAAAATGGGTATGTGAAAGAAGATGAAATCGATGACTGTGGTTATCCAAATGATAGCACCTGTGCTGTTTGTCGTTACGGTGGCGAACTGGTGTTGTGTGATGGATGCCCGTCTTCGTTCCACCTCAAGTGTTTAGGTTTAAGAGTTGTTCCTGATGGTGATTGGTTCTGCCCAGTTTGCTGTTGCAAAATATGCAGGCGACCTAGATGCAGAGATGACCGTGCTCATAATGTGGGTGTTAACAGTATTTTAGTTTGTCCTCAGTGTGAGAGAAAATTCCATTTTGGATGCTTAAAAGCTCCAGCCTCGTCATATACCAAGTTGGAAAATAGAGACTGCGAGGAGATATTTGTCGGTCTGCAGGAGCTTTTGGGAAAAGCCATTAATGTTGTTGATGCAGATAATGTTACTTGGACGTTGTTGAAGGCAGTGAAAAGGGATAGCATTGAAGGTTTGAGTGAAAACGAAAGGAAGCTAAGTGTAGCTCTTGATGTATTGCGTGGGAGTTTTGACCCAATTATTGACGCTTTTTCTGGTAGAGATTTGATAGCTGACGTTGTTTTCAGCAGAGGGTCAGAAGTGGATCGGTTGAACTTTGGTGGGTTTTATACTGTGGTACTGGAGAGGGAGGAGGAGGTGATTTCTGCTGCTACTGTGAGGATTTTGGGGAAGAGGGTTGCGGAAATACCCTTTGTGGCTACAAGGATGGAGTGTAGAAGACAAGGAATGTGTAGCATGTTGATGAATGAGATTGAAAAACAGTTAAGTTACTTGGGAGTGGAGAGGTTGGTTCTGCCATCCTCGTGCAGTGCGATAAACACATGGACAAAATCATTTGACTTTGTAAAGATGAAACCTTCAGATAAGTCTAAGCTACTTGATTTTGTTTTTCTTACCTTCGAGGGTACCATCCTCTGCCACAAACCTTTGTTGCAAGAAACTTATGTATGA 1746 0.4393 MAPTPQPPRIDIEPEYCPQAVRQWYYLASLPSNRRESSLSRDLSLEVKKHLRYLGWKFWHVDKKDKWELRYTSPITGKNYISLARACKACIEEGGCNENPQDFQENNVLLEYPISSQPTRESKKRTRVCKKREKDDHDDELGEGSSSTNGRRGKAALSIKTTTQEGEAAPVSKSSQHHSGTLIPWLIENGAVGLDSVVICHGANGVVKKGKLSYCGICCDCCNKYFSPTRFEAHARCQRHRPNSSIFLEDGRSLLDCKNEALSSQQNGYVKEDEIDDCGYPNDSTCAVCRYGGELVLCDGCPSSFHLKCLGLRVVPDGDWFCPVCCCKICRRPRCRDDRAHNVGVNSILVCPQCERKFHFGCLKAPASSYTKLENRDCEEIFVGLQELLGKAINVVDADNVTWTLLKAVKRDSIEGLSENERKLSVALDVLRGSFDPIIDAFSGRDLIADVVFSRGSEVDRLNFGGFYTVVLEREEEVISAATVRILGKRVAEIPFVATRMECRRQGMCSMLMNEIEKQLSYLGVERLVLPSSCSAINTWTKSFDFVKMKPSDKSKLLDFVFLTFEGTILCHKPLLQETYV 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03223 581 SUPERFAMILY FYVE/PHD zinc finger 272 336 IPR011011 -
Vimu10g03223 581 ProSiteProfiles Zinc finger PHD-type profile. 283 328 IPR019787 -
Vimu10g03223 581 MobiDBLite consensus disorder prediction 118 145 - -
Vimu10g03223 581 Pfam PHD-finger 286 327 IPR019787 -
Vimu10g03223 581 Pfam Tify domain binding domain 210 261 IPR032308 -
Vimu10g03223 581 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 459 542 IPR016181 -
Vimu10g03223 581 MobiDBLite consensus disorder prediction 146 176 - -
Vimu10g03223 581 MobiDBLite consensus disorder prediction 114 176 - -
Vimu10g03223 581 PANTHER PHD FINGER PROTEIN 12 18 577 IPR042163 GO:0003714|GO:0045892
Vimu10g03223 581 Pfam Acetyltransferase (GNAT) family 462 546 IPR000182 GO:0016747
Vimu10g03223 581 CDD NAT_SF 470 530 - -
Vimu10g03223 581 SMART PHD_3 285 326 IPR001965 -
Vimu10g03223 581 SMART PHD_3 327 388 IPR001965 -
Vimu10g03223 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Vimu10g03223 581 Gene3D - 418 575 - -
Vimu10g03223 581 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 414 568 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03223 Vimu-Chr10 42658392 42660206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03223 127 523 PHD Transcription Factor Family AT5G58610 39.401 1.29e-84 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g03223 Acetyltransf_1 4.3e-06 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03223 - - vra:106760454 1084.71