Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03214 ATGGAGGACGCGTTTGCCAGATCTATTCCCGAGGTCCTCGATTTCTTTGGAGTGAACCCGACTAAGGGTTTATCTGATGCTGAGGTAGTACAACATGCTAGACTTTATGGGAATAACGTGCTGCCTGAAGATCAAAGAGCTCCGTTTTGGAAATTGGTTTTGAAGCAATTTGATGATTTACTTGTAAAGATACTAATTGCAGCTGCTCTTATATCTTTTATTCTGGCTTTAGTTAATGGAGAAACAGGCTTGATGGCATTTCTGGAGCCTTCTGTTATTCTCATGATATTGGCAGCAAATGCAGCAGTTGGAGTGATTACGGAATCAAATGCTGAAAAAGCTCTAGAGGAGCTGCGTGCCTATCAAGCTGATGTGGCAACTGTACTGCGCAATGGTTGTTTTTCCATACTTCCTGCATCTGAACTTGTTCCTGGGGATATTGTGGAGGTTTCTGTGGGCTGCAAAATTCCTGCTGACATGAGGATGATTGAGATGCTAAGCAATCAAGTGCGTGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCGGTGGAGAAAGAGCTGAAAATAACAACAACTTCAAATGCTGTATACCAAGACAAAACAAATATTCTGTTTTCGGGTACGGTTGTGGTTGCTGGTAGGGCAAGAGCTGTTGTGGTAGGAGTTGGTCCTAATACGGCCATGGGCAACATACGAGATTCAATGTTGCGAACAGAGGATGAGGCAACACCATTGAAAAAGAAGCTGGACGAGTTTGGTACCTTTTTGGCCAAGGTTATAGCAGGGATTTGTGTTTTGGTGTGGATTGTAAATATTGGTCACTTCCGTGACCCTTCTCATGGTGGTTTCTTGAGAGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCAGAAGGGCTCCCTGCAGTTGTGACAACGTGTTTGGCTCTTGGAACAAAGCGTATGGCTAGGTTGAATGCCATTGTTCGCTCCTTGCCATCCGTCGAGACATTGGGCTGCACAACTGTTATTTGCAGTGACAAAACTGGGACACTAACTACTAACATGATGTCAGTTGCGAAGGTATGTGTTGTTGAATCTGCAAATCGTGGCCCTGTTGTTTCTGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGCATAATATTTGACAGTACAGGGATGCAGCTTGACTTTCCTGCTGAATTGTCTTGTCTTCTTCACATGGCAATGTGTTCTGCTCTTTGCAATGAATCAACCCTGCAGTATAATCCTGATAAAGGGAATTATGAAAAAATCGGTGAATCAACTGAAGTGGCACTACGTGTCCTGGCAGAAAAGGTTGGTCTCCCTGGTTTCAATTCCATGCCATCAGCCTTGAATATGTTGACTAAGCATGAACGTGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGATACATGTTTTGGAGTTTTCTCGAGATCGGAAAATGATGAGTGTGCTTTGCAGCCGGAACCAGATGCATATTTTGTTCTCAAAAGGCGCCCCAGAAAGTATAATACCTAGATGTTCAACCATTCTGTGCAACAGTGATGGTTCCATTGTGCCCCTTACAGCTGATATTCGAGCAGAACTGGACTCAAGGTTCAACAGTTTTGCAGGAAAAGAAACATTAAGATGCCTTGCTTTGGCCCTGAAATGGATGCCCTCAGTTCAACAGTCATTGTCCTTTGATGATGAGAAGGATCTTACATTTATTGGGTTGGTCGGGATGCTGGATCCTCCACGAGATGAAGTAAAAAATGCAATGCTTTCCTGTATGACTGCTGGCATCCGTGTTATAGTCGTAACTGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCAATTGATTGATTTTTCTGAACATTCTTACACTGCATCTGAGTTTGAAGAACTTGCACCTCTGCAGCAAACTATAGCATTGCAACGTATGGCACTTTTTACTAGGGTTGAGCCTTCTCATAAAAGGATCCTGGTAGAAGCATTGCAGCACCAGAATGAAGTGGTTGCAATGACGGGTGATGGAGTTAATGATGCACCAGCACTGAAGAAGGCAGATATAGGAATTGCTATGGGTTCAGGAACAGCTGTTGCCAAGAGTGCTTCAGACATGGTGCTGGCTGATGACAACTTTGCCTCTATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTCGATATATGATTTCTTCCAATATTGGCGAAGTAGTTTGTATATTTGTGGCTGCAGTGCTTGGAATACCGGATACCCTTGCCCCTGTCCAATTGCTTTGGGTCAATTTGGTCACTGACGGATTACCTGCCACTGCTATTGGCTTCAATAAACAAGACTCTGATGTGATGAGGGCTAAGCCTCGAAAGGTGAATGAAGCCGTTGTTTCTGGTTGGCTCTTCTTTCGCTATTTGGTAATAGGAGCTTATGTTGGCCTTGCTACTGTTGCTGGTTTTATTTGGTGGTTTGTTTATTCTGATGGTGGCCCTAAACTTCCATACACAGAATTGATGAATTTTGATAGCTGCCCAACCAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACTGTATCAATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTCAGTGAAAATCAATCTCTTCTGGTTATCCCTCCATGGAGTAACATGTGGCTTGTTGCTTCTATAATCATAACTATGCTTCTTCACATACTAATCTTATATGTTCACCCACTATCGATTCTTTTCTCTGTAACACCGTTATCTTTGGCTGACTGGACAGTTGTCCTCTATCTTTCGTTACCTGTTATAGTCATTGATGAGGTGTTGAAGTTCTTCTCCAGAAATCCCATCGGTAATCTTTATTCCATTTTATTAAATTTTCAGATCAATCTGTACCTTGTTTGTGATTTAGATTCAGGTTATGGTTCAGGAGAATCTAAATCATCAATCTCCATTTGCGTGGCAATCGAGGAGTTGAACAAGGCTCAGAGTGGCTTATTAGATATCCATCTCATGAACATGGCTAAACATTCCTCAGGTTTGAACTCCGGAGCTGTGTGCCCTCCACCCTGCAAGTAA 3165 0.4275 MEDAFARSIPEVLDFFGVNPTKGLSDAEVVQHARLYGNNVLPEDQRAPFWKLVLKQFDDLLVKILIAAALISFILALVNGETGLMAFLEPSVILMILAANAAVGVITESNAEKALEELRAYQADVATVLRNGCFSILPASELVPGDIVEVSVGCKIPADMRMIEMLSNQVRVDQAILTGESSSVEKELKITTTSNAVYQDKTNILFSGTVVVAGRARAVVVGVGPNTAMGNIRDSMLRTEDEATPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVESANRGPVVSEYSVSGTTYAPEGIIFDSTGMQLDFPAELSCLLHMAMCSALCNESTLQYNPDKGNYEKIGESTEVALRVLAEKVGLPGFNSMPSALNMLTKHERASYCNHYWEEQFRKIHVLEFSRDRKMMSVLCSRNQMHILFSKGAPESIIPRCSTILCNSDGSIVPLTADIRAELDSRFNSFAGKETLRCLALALKWMPSVQQSLSFDDEKDLTFIGLVGMLDPPRDEVKNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDQLIDFSEHSYTASEFEELAPLQQTIALQRMALFTRVEPSHKRILVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMRAKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFIWWFVYSDGGPKLPYTELMNFDSCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNMWLVASIIITMLLHILILYVHPLSILFSVTPLSLADWTVVLYLSLPVIVIDEVLKFFSRNPIGNLYSILLNFQINLYLVCDLDSGYGSGESKSSISICVAIEELNKAQSGLLDIHLMNMAKHSSGLNSGAVCPPPCK 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03214 1054 SFLD C1.7: P-type atpase like 326 743 - -
Vimu10g03214 1054 SUPERFAMILY HAD-like 578 739 IPR036412 -
Vimu10g03214 1054 Gene3D - 342 735 IPR023214 -
Vimu10g03214 1054 Pfam E1-E2 ATPase 122 324 - -
Vimu10g03214 1054 Gene3D - 55 976 - -
Vimu10g03214 1054 FunFam Calcium-transporting ATPase, putative 213 341 - -
Vimu10g03214 1054 Coils Coil 111 131 - -
Vimu10g03214 1054 Gene3D - 22 237 - -
Vimu10g03214 1054 Pfam Cation transporting ATPase, C-terminus 775 974 IPR006068 -
Vimu10g03214 1054 Pfam Cation transporter/ATPase, N-terminus 8 72 IPR004014 -
Vimu10g03214 1054 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Vimu10g03214 1054 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Vimu10g03214 1054 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Vimu10g03214 1054 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Vimu10g03214 1054 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Vimu10g03214 1054 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Vimu10g03214 1054 FunFam Calcium-transporting ATPase 355 592 - -
Vimu10g03214 1054 NCBIfam HAD-IC family P-type ATPase 92 369 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g03214 1054 NCBIfam HAD-IC family P-type ATPase 661 776 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g03214 1054 NCBIfam calcium-translocating P-type ATPase, SERCA-type 53 846 IPR005782 GO:0005388|GO:0006816|GO:0016020
Vimu10g03214 1054 Pfam Cation transport ATPase (P-type) 415 524 - -
Vimu10g03214 1054 FunFam Sodium/potassium-transporting ATPase subunit alpha 584 730 - -
Vimu10g03214 1054 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g03214 1054 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g03214 1054 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g03214 1054 PANTHER CALCIUM-TRANSPORTING ATPASE 9 977 - -
Vimu10g03214 1054 Gene3D - 355 592 IPR023299 GO:0000166
Vimu10g03214 1054 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 687 981 - -
Vimu10g03214 1054 Pfam haloacid dehalogenase-like hydrolase 583 705 - -
Vimu10g03214 1054 SFLD p-type atpase 326 743 IPR044492 -
Vimu10g03214 1054 FunFam Calcium-transporting ATPase 112 237 - -
Vimu10g03214 1054 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 977 IPR023298 -
Vimu10g03214 1054 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Vimu10g03214 1054 CDD P-type_ATPase_SERCA 5 976 - -
Vimu10g03214 1054 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Vimu10g03214 1054 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Vimu10g03214 1054 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03214 Vimu-Chr10 42569076 42596659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03214 1 977 Primary Pumps ATPases(2) AT1G10130 84.340 0.0 1710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03214 K05853 - gmx:100783509 1828.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03214 10 42569076 42596659 Vimu10g03214 10 42569076 42596659 ECH