Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03202 ATGTTGCTCCACGAAACGGTTCAGTTCCCATCTTCTCCGGTTCACCAAACCATGCTGACGCAAAGTGATATAGAAGACCTGTTTTCCCTCATAAACAAATCCATAGACCGTCCCAGCCTGGGCTCCGGTTCGCAGGGATCGAACCGGACGGTTTACTCTTCCGAGGAAAGAAAGCTGAGACGAATGCAATCGAACCGGGAATCGGCCCGAAGGTCCCGCTTCAGAAAGAAGAAGCATCTTGAGAACCTGACGAGCCAACTGAAGCGGTTGAGAATCCAAAACCGGTTTCTCAAAAACCGACTCGCCTCGACCATGCACCAACACCTCCTTCTATCCCTACATAACGATCATCTTAAATCCGAAGCTATTGCCCTTATGGCCACTCTTTCGGATCTGTGTGGGATTTTGTTTTAG 414 0.4952 MLLHETVQFPSSPVHQTMLTQSDIEDLFSLINKSIDRPSLGSGSQGSNRTVYSSEERKLRRMQSNRESARRSRFRKKKHLENLTSQLKRLRIQNRFLKNRLASTMHQHLLLSLHNDHLKSEAIALMATLSDLCGILF 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03202 137 MobiDBLite consensus disorder prediction 53 69 - -
Vimu10g03202 137 Coils Coil 80 107 - -
Vimu10g03202 137 Gene3D - 55 109 - -
Vimu10g03202 137 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 102 IPR004827 GO:0003700|GO:0006355
Vimu10g03202 137 Coils Coil 52 72 - -
Vimu10g03202 137 SMART brlzneu 53 124 IPR004827 GO:0003700|GO:0006355
Vimu10g03202 137 SUPERFAMILY Leucine zipper domain 57 111 IPR046347 GO:0003700|GO:0006355
Vimu10g03202 137 MobiDBLite consensus disorder prediction 36 75 - -
Vimu10g03202 137 CDD bZIP_plant_GBF1 58 108 IPR045314 GO:0003700|GO:0006355
Vimu10g03202 137 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Vimu10g03202 137 Pfam bZIP transcription factor 56 104 IPR004827 GO:0003700|GO:0006355
Vimu10g03202 137 FunFam BZIP transcription factor 55 106 - -
Vimu10g03202 137 PANTHER BZIP TRANSCRIPTION FACTOR 44 41 136 - -
Vimu10g03202 137 MobiDBLite consensus disorder prediction 36 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03202 Vimu-Chr10 42503819 42504996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03202 13 118 bZIP Transcription Factor Family AT3G49760 38.938 3.90e-17 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu10g03202 bZIP_1 2e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03202 - - gmx:102661984 217.624