Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03198 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACGGTACCGTTTTGGACTCCACAATCTCCGTAGACCACAGCACCCGATGCCCTAGAGGTTTCGGCTTCGTTACCTTCTCTGACCTCTCCGCCGCCGATAAAGCCCTGCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTAAAGAAAGCAATTCCAAGGAGTGAACAACAGCAACACCAAAACCATTTACACAATAGAGGCGGAGGTAACTATAGTAGTAGTTGTGACTGTAGTAGTGACACCAACGTTAGGACTAAAAAGATTTTTGTGGGGGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGTCGGATAACTGACGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCAAGGGGGTTTGGGTTCATCACCTTTGATTCCGAGGAATCGGTTCAAAGTGTTATGGTGAAGAATTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCTAAAGAGGGGAACCATGGGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTCCTCCTTACAGTCCTAGGAATATGCTTCCGGGTCTTGCTCCTTTGCCGTGGTATGGTAGTGATGGAGTATATGCATATGGTTCTAATGCTTACGGTTGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCCTCTGAAGCTTCTAGGAACTTCTGGTACGGGCCAATGATGGCTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTATTCCAAACATAGCGTGGGGTAGGATTGGAATAGTAGGTAGTGGTATAGGATCTTGGGGGTATGGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCAGGCAACACGACATTGCATCATGGTGTAAAGCAGAATGTTGTGGACTCTTCGAGTTTGAAAGGGAGCAATGGTGAAATATCTAGCTGA 1107 0.4607 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQQHQNHLHNRGGGNYSSSCDCSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKNFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLAPLPWYGSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSEASRNFWYGPMMAGPQACQVPYASAIPNIAWGRIGIVGSGIGSWGYGGILGSATNLKFDQPFIGNGFVPGNTTLHHGVKQNVVDSSSLKGSNGEISS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03198 368 MobiDBLite consensus disorder prediction 202 216 - -
Vimu10g03198 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Vimu10g03198 368 CDD RRM2_Hrp1p 121 198 - -
Vimu10g03198 368 Gene3D - 116 204 IPR012677 -
Vimu10g03198 368 SMART rrm1_1 121 193 IPR000504 GO:0003723
Vimu10g03198 368 SMART rrm1_1 11 82 IPR000504 GO:0003723
Vimu10g03198 368 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 297 - -
Vimu10g03198 368 MobiDBLite consensus disorder prediction 202 222 - -
Vimu10g03198 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Vimu10g03198 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Vimu10g03198 368 FunFam RNA-binding protein 1 116 206 - -
Vimu10g03198 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Vimu10g03198 368 MobiDBLite consensus disorder prediction 85 110 - -
Vimu10g03198 368 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Vimu10g03198 368 SUPERFAMILY RNA-binding domain, RBD 116 205 IPR035979 GO:0003676
Vimu10g03198 368 MobiDBLite consensus disorder prediction 90 110 - -
Vimu10g03198 368 Gene3D - 2 97 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03198 Vimu-Chr10 42481294 42482542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03198 6 258 Eukaryotic Initiation Factors Gene Family AT3G16380 27.237 4.29e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03198 K14411 - gmx:100816822 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03198 10 42481294 42482542 Vimu10g03198 10 42481294 42482542 ECH