Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03188 ATGGATGACAGTAGTTTGGTCGATACACCAACAGAATGTGGAATGAAGCTAAAGATGCATAAAAAAGTGGATCCCACACTTTTCAAGAACTTAGAGGAAAATTGGCTTTGTGCTTTACATGGGAGACACTATCTTCACACGGATGTCAAAGAGAACAAGTCTAAGTTCCAGTTTGATGAGGCTGATATAGAGATGAAGTCCAAAGAACCATTGGTCCATTCTTATTGGGAGAATACGGATCCTACCAAGTGGAAAGCGAGTTGTTATGGTGAGAGAAAGAGAAATTTCGTTAAAGGGGGGGTGTTGAGAGAGAGAGAAGGGGAAGAGGAGAAGATCGAGGAATTAGCAGAGGAGGATAACATTGAGTCGCAAGTGAACTTGTTGGAGGCTGAAGGGTCACAAATAAGAGAGTCGATTGAGGAGCTTAAGGCTCAGGCAGAGCCTGTCGCAAAAAAGAATGGAGGAAGGAGGCAATTCAATGGGCTCAAAGAAGAAGAACGAAAACAAGATTGTCTTAGGGTCTGGATTGTGCCCCCTTCAGGGGATACAATGAAGGAATTTTGGCAATCAGCCAAGATCGAAGGTGAAGGTCGGTTTGGCACAATTCATTTCTTCAACTCTTTGGTGAATGACAATGAAGATTTGTCTTGGGAACAATTGAAGGAAGCTCTACTGGAGAGATATGGAGGCTGGGGAGAAGGAAGTCGTTATGAGCAACTTACAGTGCTTAAACAACTTGGGAAGGAAGAAGAATATATCAAAAGTTTTGATTATTTGGTTGCTCAAGTACCTCGTATTCCTGAGGATCAATATTTTGCTTATTGGTTTAATACCTATTTTGGTCCCTCTTTTGGGAGGGTGTGGGTTCCCTTATGCAGAGGTCTTATAGCTGGGCCTGAGTACCTCACCAGAAATTTAGATGACTGGGTTGCAGTTGAGATGAACATGAATGTCAACTTGAACAGCATGAGGGATGTAAGCCTTCGATTCTACCGAAGCCAGGAGTACCCTCGGCTTCCTTATTACGTGGATCTTCCTGGTTCTTTAGCCCTCCCTGTGTTCGAAAGAGGCACCAACACATGCCTCGGTGTCATCCAGATTCTAACGCCTGCCTGCGACACCATCAACTATTGCCCGCAGCTTCTTAACAATAATCAAATGTGCCGACAAGCACAAATCAGTGGCTTTGGAGTAGCCAGAACTGACGGAGTTGGCACCGCCACCAACGAAACAAGCTCCTTGACGAACCACGAAGCTGGACGAAGAGGGTTGAAAGATGGCATTAGGGCACATCTCAAGAGAATACAGCCAGTGATGCCATTGACACGTGGAAATATGTTGAATGTTGCTAGAAAGTTGAAAATGGAGATGGCTTCACGAAGAAAGAGTTATAGTGGGATGGGTCATCAAGACTCGCGTTTTAAGTCTGTGTGGACTGGAAGGGGTACATCTAATTCGCCAGGCCCAAAGAATGAGATGGTATACAAAGGGAGACATGGGCCACGTGATAAAGGCATAAGACGTTTACCCTATCAAGAGCTAATTGATAGAAGGCAGAAACGGTTATGTTTTAAGTGTCGTGGGCCCTACCATCCTTCCCACATGTGTCCAGATAAGCAGATAAAAATAATGATATTGGAAGAGGGCAATACACAGAACGAAGCGAAGACTGACGCTGACGTAATCGAAGGAAACTACAGTGTTTCAAGCTTCCAAAGTTTAGTGGAGGATAAGTCCACTCATGCCCACACTCTGAAATTGAGAGGTAAAATTAAAGAAGAACATGAAAACACGAGGAACATGAAGGTCTTGATGGGTGATGGCCATTTGACTCAAACAAAAGGGCTATGTCATGGCTTGGAGGTGGAGCTCGAGGGAGAAAATTTCAAATTGGATGCCCACTTATTTGAGTTGCAAGACATCGATATGATACCTGGAATATCGTGGTTGGCATCATTGAGGGAGATATTGGTCGATTGGGGAGATCAAGTCATGAAGATCAAGATTCCAGAGGGCATTCGCATTCTGAAAGGAATGATGCATTCTAAAAATGTCCCCACAGCATTAAAGGTGATGATTGAGGACAAATCTGAGATACAAGGGAAGGACATGTTTGAACTCTCTCCGAAGCAAAGACCCCAAGGGACTACCTCTAGTGCGATCAAAGGAACATGCAATCACGTTGCTGCCAGGGGTAGGGCCTGTCAATGTACGCCCTTATCGTTATCTTTATCACAAAAGAGAAATGAGATAGAAAGACAATCCAATATTGTTGGTAAAGAAGAAAGATGCTTCTTGGCATGTGTGATGATTTCAATAGATAAGTTTCCAATTCTGATGATTGAAGAACGGTTGGACAAGCTACGTGGGCCATTACGAGTACTTGGTAATGCCTTTCAGGTTGATAATGCCCCTTCAACCTTTCAGGCCCTCGTGAATGAAGTTTTCAGTCACTTGGAGGAAATTTTAGGCATCCTAAGATCCCACCAACTCTACATTAATAAAAAGAAATGCTTATTTGGACAAAAAAGTGTGGAAGACTTAGGCCATATTATTTTCCAAGAAGGCATGGGAGTGGACCTAGCAAAGGTTCGGAGTGCACAGGATGGCAAGCCCCTCATGGATTTGACGAAGAAAGATGCATTTTGTTGGAATGCAAGTGCTCAACAAGCCTTTGAGGAACTCAAAACAAGGATATTGGCTACTCGTAGCATTTGGAAAGCCGGAGATAGATGGAGTAGAAGGGCAATTGATGAGGCCACTTGGGAAGATGATATTGTGTTGAGGAGCCAATTTCCCACTTAA 2805 0.4374 MDDSSLVDTPTECGMKLKMHKKVDPTLFKNLEENWLCALHGRHYLHTDVKENKSKFQFDEADIEMKSKEPLVHSYWENTDPTKWKASCYGERKRNFVKGGVLREREGEEEKIEELAEEDNIESQVNLLEAEGSQIRESIEELKAQAEPVAKKNGGRRQFNGLKEEERKQDCLRVWIVPPSGDTMKEFWQSAKIEGEGRFGTIHFFNSLVNDNEDLSWEQLKEALLERYGGWGEGSRYEQLTVLKQLGKEEEYIKSFDYLVAQVPRIPEDQYFAYWFNTYFGPSFGRVWVPLCRGLIAGPEYLTRNLDDWVAVEMNMNVNLNSMRDVSLRFYRSQEYPRLPYYVDLPGSLALPVFERGTNTCLGVIQILTPACDTINYCPQLLNNNQMCRQAQISGFGVARTDGVGTATNETSSLTNHEAGRRGLKDGIRAHLKRIQPVMPLTRGNMLNVARKLKMEMASRRKSYSGMGHQDSRFKSVWTGRGTSNSPGPKNEMVYKGRHGPRDKGIRRLPYQELIDRRQKRLCFKCRGPYHPSHMCPDKQIKIMILEEGNTQNEAKTDADVIEGNYSVSSFQSLVEDKSTHAHTLKLRGKIKEEHENTRNMKVLMGDGHLTQTKGLCHGLEVELEGENFKLDAHLFELQDIDMIPGISWLASLREILVDWGDQVMKIKIPEGIRILKGMMHSKNVPTALKVMIEDKSEIQGKDMFELSPKQRPQGTTSSAIKGTCNHVAARGRACQCTPLSLSLSQKRNEIERQSNIVGKEERCFLACVMISIDKFPILMIEERLDKLRGPLRVLGNAFQVDNAPSTFQALVNEVFSHLEEILGILRSHQLYINKKKCLFGQKSVEDLGHIIFQEGMGVDLAKVRSAQDGKPLMDLTKKDAFCWNASAQQAFEELKTRILATRSIWKAGDRWSRRAIDEATWEDDIVLRSQFPT 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03188 934 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 799 902 - -
Vimu10g03188 934 MobiDBLite consensus disorder prediction 469 490 - -
Vimu10g03188 934 Coils Coil 125 145 - -
Vimu10g03188 934 SUPERFAMILY DNA/RNA polymerases 801 901 IPR043502 -
Vimu10g03188 934 Gene3D - 813 858 IPR043128 -
Vimu10g03188 934 Pfam Retroviral aspartyl protease 551 657 - -
Vimu10g03188 934 Coils Coil 98 118 - -
Vimu10g03188 934 MobiDBLite consensus disorder prediction 461 505 - -
Vimu10g03188 934 Gene3D Acid Proteases 579 675 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03188 Vimu-Chr10 42397847 42405615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03188 328 383 NLP Transcription Factor Family AT4G35270 55.172 3.64e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03188 - - vra:106765973 247.284