Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03186 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCGGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAGAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAAGCACGGTGGCTTCTCTGAAGAAGAAGATAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCGGCACAATTGCCAGGAAGAACTGATAACGACATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGGAAGCACCGTAAGGAACTGCAGGCACGTAACAAAGGAAATGGTGTCGTTAAGCAGGAGAACAATTCCTCACTCTTGCTTCAGGAAAACATTGTACAACAACAGCCTTGTTGGCCACAGATTCCGGCGCCGCCACTTTCACCGTACATAAGTCAAAATCCAAGTTTCAACGACCAAGACTCTATTAGAAAACTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATAGGGCTGAATGTTCAGTTTCCACAGGGTTCTCTCTCATCAACACAACAAATTGAAGAGGAGCAAGTCCATGTTAGCTCTTCTGGGTGCATGAACTCTATTGGCAACAGCCAAGTACAATTTGGTGAGAGTAATGAGTACTGTTCTGAGTTGGTGCAAGGAGAAGTGAGTTTCACTTCCGCAGCTATTGGGGAAATGGTTTCTACTAATGATTATTCTGAAAGGTTATTAGGAGGGTTGGAGTTCTTATATGGAGAGGAAATGATTAGCGATAAGATAATGGGTGGTTGTGCATCTTCATGTTGTGGGCAAAGTACTAATTGGGGCGAGACAAGTTCTTTGATTTATCCTCCTCTTGTTGCTTCGAGTTTCGAGGGTGTGAGGCAAGAGATGCCACGAGAAAATGCTTTTCAAGAGTTGAGCTACCCATAG 1023 0.4565 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNGVVKQENNSSLLLQENIVQQQPCWPQIPAPPLSPYISQNPSFNDQDSIRKLLIKLGGRFSDDYQPIGLNVQFPQGSLSSTQQIEEEQVHVSSSGCMNSIGNSQVQFGESNEYCSELVQGEVSFTSAAIGEMVSTNDYSERLLGGLEFLYGEEMISDKIMGGCASSCCGQSTNWGETSSLIYPPLVASSFEGVRQEMPRENAFQELSYP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03186 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vimu10g03186 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vimu10g03186 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu10g03186 340 Gene3D - 7 68 - -
Vimu10g03186 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vimu10g03186 340 CDD SANT 71 113 IPR001005 -
Vimu10g03186 340 FunFam Transcription factor RAX3 70 144 - -
Vimu10g03186 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu10g03186 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vimu10g03186 340 SMART sant 13 64 IPR001005 -
Vimu10g03186 340 SMART sant 67 115 IPR001005 -
Vimu10g03186 340 CDD SANT 16 62 IPR001005 -
Vimu10g03186 340 PANTHER OS09G0431300 PROTEIN 1 240 - -
Vimu10g03186 340 FunFam Transcription factor RAX3 7 68 - -
Vimu10g03186 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vimu10g03186 340 Gene3D - 70 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03186 Vimu-Chr10 42382825 42384095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03186 1 186 MYB Transcription Factor Family AT3G49690 66.169 5.40e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g03186 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03186 K09422 - gmx:100790407 591.267