Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03184 ATGGTCTTAGGTACCTCTAACCTTCAACTAGGTCTTGGTCTTGGCCTCCAAGATCAGTCTCAAGAAACATGCATGAAGAGCCATGAACGAAGGCAAAGACAAAGACAAAGCCAGAAAAAGAAGGATTCCGATGAATGTTTTAATTTTCACCGTCGTGCTTCTCCTCCAAGTGCAGTGTCTTCGTTTCTTAACTCATCAAGCATCATGAAGAGAGAGCGAGATCAGTTGATCGCGGGTGAAGAATTTGAGTTAGAGGTAGAGAAGTTTCGCTCAAACCTAAGAGTTGTGGATCTTGATGAATATGGTTACTCAAAGAAGAAGCTTAGGCTCACCAAAGAACAATCTGCAGTCTTGGAAGATAGCTTCAAAGACCATTCTACTCTCACTCTGACACAGAAGCAAGGATTGGCAAAGAAACTGAATCTGCGGGCGAGACAAGTGGAAGTATGGTTTCAGAATAGGAGAGCAAGGACAAAACTGAAGCAAACGGAAGTGAACTGTGAGATACTGAAAAAGTGCTGTCAAAGTCTAACAGAAGAGAACAAGATGCTGAAAAAAGAGTTGGAAGACCTTAAATCGATGAAAACAGCATTGCAGGGACCCCTTTTTATGCAGCTTCCAGTGCCAACCCTTACAATATGCCCTTCCTGTCAGAGAATTTCCGGTGGCAGCGCCGCCACCACCAACAGTGCCTCCTCTCCTACCACCACCACCACCACCACCTTGCTTCTGGGCCCAAAGCCCCATCACGATCACCACTTCTATAAAAATAACTATACATTCACACAATCATCTGCAGCTTGCTAG 807 0.4473 MVLGTSNLQLGLGLGLQDQSQETCMKSHERRQRQRQSQKKKDSDECFNFHRRASPPSAVSSFLNSSSIMKRERDQLIAGEEFELEVEKFRSNLRVVDLDEYGYSKKKLRLTKEQSAVLEDSFKDHSTLTLTQKQGLAKKLNLRARQVEVWFQNRRARTKLKQTEVNCEILKKCCQSLTEENKMLKKELEDLKSMKTALQGPLFMQLPVPTLTICPSCQRISGGSAATTNSASSPTTTTTTTLLLGPKPHHDHHFYKNNYTFTQSSAAC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03184 268 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Vimu10g03184 268 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Vimu10g03184 268 Pfam Homeobox associated leucine zipper 161 195 IPR003106 GO:0006355|GO:0043565
Vimu10g03184 268 MobiDBLite consensus disorder prediction 23 62 - -
Vimu10g03184 268 Pfam Homeodomain 105 159 IPR001356 GO:0003677
Vimu10g03184 268 SUPERFAMILY Homeodomain-like 105 168 IPR009057 -
Vimu10g03184 268 SMART halz 161 206 IPR003106 GO:0006355|GO:0043565
Vimu10g03184 268 CDD homeodomain 105 162 IPR001356 GO:0003677
Vimu10g03184 268 MobiDBLite consensus disorder prediction 23 49 - -
Vimu10g03184 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 238 - -
Vimu10g03184 268 Gene3D - 100 166 - -
Vimu10g03184 268 SMART HOX_1 104 165 IPR001356 GO:0003677
Vimu10g03184 268 Coils Coil 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03184 Vimu-Chr10 42353880 42355210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03184 99 268 Homeobox Transcription Factor Family AT4G37790 56.395 1.64e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu10g03184 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03184 K09338 - gmx:100790927 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03184 10 42353880 42355210 Vimu10g03184 10 42353880 42355210 ECH