Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03168 ATGGGTATCTGCATATCCTCTGAATCTTCAGCGATTCATGGAGCGCCTGAAGAAGTTCGTGATGAAAATGTGTTAGTGTTTGAAGCAACCAAGCTTCTCAGGGGACTTTCCTCTGCTTACTCTAAACAAGGTGCCAAAGGGCTCAACCAAGATGCTGCAACACTTTGTCAGGTTTATGGGACGGCAAACGCAGCATTCTGTGGAGTTTTTGATGGGCATGGAAGGAATGGTCACATAGTGAGCAAAATAGTGAACAGCCGTTTGTGTTCACTCATAGTGGACCAAAAAAAAGTGCATGCAAAGATTGATAAGAAGAACATCACAAGGCATGCGGAGACAGTTGAAGACGACTCACAAGCTCTACTAAACAAGAATTTTCAAGAATGGAAAGAAGCCATTCTTTATGGTTTCAGGGTGATGGACAAGGAGGTGAAGCTGCAAGAGAATCTGGACTGCTCTTGCAGTGGAACTACGGCTGTAGTTGTCATAAGACAGGGTGAAGATCTTGTCATAGCTAACCTTGGTGACTCTAGAGCAATCTTGGGGACAATCTTTGACGGTGAAATCAAACCCATTCAATTGAGCACGGATATGAAACCTGGATTACCTTGCGAAGCAGAACGAATAAAAAGTTGCAATGGCCGTGTATTTGCTCTGAAGGAAGAACCACATATCCAGCGAGTGTGGTTACCCGATGAGAACTCTCCAGGTCTGGCCATGTCTCGGGCTTTTGGAGATTTCATGCTCAAAGACCACGGCATCATTGCCATCCCTGACATTTCGCATCGCACTCTAACATCTACCGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGCAATGAGGAGGTTTCCTCAATTGTGTGGGCAGCAGACACTGAAAATGAAGCAGCAAGGGCTGTTGTGGAAGCAGCAGCTTTAGCATGGAAAAGCAAGTATCCTTCTTCTAAGTTAGATGACTGCACAGCCGTTTGCCTCTTCCTACAGAAGAAACCACAGTTTCTACCCGTCAAAAGTGGAAATCCCTCATAA 1044 0.4521 MGICISSESSAIHGAPEEVRDENVLVFEATKLLRGLSSAYSKQGAKGLNQDAATLCQVYGTANAAFCGVFDGHGRNGHIVSKIVNSRLCSLIVDQKKVHAKIDKKNITRHAETVEDDSQALLNKNFQEWKEAILYGFRVMDKEVKLQENLDCSCSGTTAVVVIRQGEDLVIANLGDSRAILGTIFDGEIKPIQLSTDMKPGLPCEAERIKSCNGRVFALKEEPHIQRVWLPDENSPGLAMSRAFGDFMLKDHGIIAIPDISHRTLTSTDQFIVLASDGVWDVLSNEEVSSIVWAADTENEAARAVVEAAALAWKSKYPSSKLDDCTAVCLFLQKKPQFLPVKSGNPS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03168 347 CDD PP2Cc 37 299 IPR001932 -
Vimu10g03168 347 PANTHER PROTEIN PHOSPHATASE 37 330 IPR015655 GO:0004722|GO:0006470
Vimu10g03168 347 ProSiteProfiles PPM-type phosphatase domain profile. 36 332 IPR001932 -
Vimu10g03168 347 Pfam Protein phosphatase 2C 106 309 IPR001932 -
Vimu10g03168 347 SUPERFAMILY PP2C-like 33 333 IPR036457 -
Vimu10g03168 347 Gene3D - 26 335 IPR036457 -
Vimu10g03168 347 SMART PP2C_4 29 330 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03168 Vimu-Chr10 42231784 42233359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03168 1 337 PP2C-type Phosphatase Gene Family AT5G26010 50.432 3.93e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03168 - - gmx:100795893 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03168 10 42231784 42233359 Vimu10g03168 10 42231784 42233359 ECH
Vimu1g02850 1 40776654 40779072 Vimu10g03168 10 42231784 42233359 PCT