Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03161 ATGGAGAGAGATATGTATATCGCTCCACTGGAGATTTCTGGTCGAGGTGATACAGTAATAGATGAAATATCCCAACATCCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCACATTATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTACAAGTAATGTCCATGCTGATGCTTGCTTCATTAGTCCATCAACTATTGCTGACTCCAGTCCATTAGTTACATCACGGAGAAAGATTATTGTGGGAGATGCCTCAAATCCCATGGAGAACTCTGAGTTTCAAGAGCATTTAGTTGGAGGAGTGCCCCTCACTCCTGCTTCGCTTGCTGCCATTCTTGCTGATAGAATTGGACTTGAAGAAAATTTGGAGAATTCAGCCGCCGCCATAGCTCCCTCAATCTTCTCCACGGGGGCACTGGAGGTATTCTTCAACAATTTGCATGGTACTTCAAACCCTTTGTCTGGAACTTTTGAGGAGTGTGGTTACAATGAAGTTCCTAGTAAGTGGAATGCTAACAAATTTCCTAAAGCTCCAGAGAATGATGGAACTTGTCAGCCTTATTCTTCTGTGGCAAACCTGGATCCAAATGAATGGGCAACATCAAACGTTGCAAACATGGCCAACTATGCTCACTATTCCTCTACTTTTAGTAAAGAACTTTCTCTGAGTCTTGCAACATCTACAGCCGCAGGACAGTGCTCAAACGTGACTTGCTCTAATATGACCCCGTGCATGAATGGAACCATTTCCTGCAGCAGTAGTAGGGAAATTTCTATGAATTTGGGTGGTAATAAATATGCACAAATTTCACCGGAAGTACTGGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTCAAAATCTGGAACAGTTGAACTATTCAGCCACTGGTAATAGAGCAGGTGGACACAAGTCAACTTCAGCGTTTCCACCTAAGAGAAACATCTTGACAGATCACAATGCAAGTTCTGTTTACGAATCTCATGCAGAGTCTCCATTGCAAAGGCAGGCTGCTGAATCTAAGAAAGCTCAACTGCTGGCACTTCTACAACTGGTGGACAGTCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCAGCTACCGAGCTGGACCCACAGATACATGCACATTTTGCTCTTCAAACCATCTCTGTCCTTTACAAGGACTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGCTTCAAAAAATCGTGTACGGAAGACAGTGAATGGTCCATTGAATCTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCGGAAAGATCTGTCTCGGTTCTACGGGCATGGATGTTTCAGAATTTCCTACACCCGTATCCCAAAGATTCAGAGAAGCATTTACTTGCAGTGAAAAGTGGGTTGACTAGAAGTCAGGTATCCAATTGGTTTATAAATGCTCGTGTGCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCCTGTCGAAATGAAGAAGAAATCCAGAATACCCATGGAAACAGGATAAGCATGAGTAACCAAAGGTTTAATGTTAACTAA 1689 0.4287 MERDMYIAPLEISGRGDTVIDEISQHPTSNPLIQCYSLDLNNQSHIINGISMLSGEQGEPTSNVHADACFISPSTIADSSPLVTSRRKIIVGDASNPMENSEFQEHLVGGVPLTPASLAAILADRIGLEENLENSAAAIAPSIFSTGALEVFFNNLHGTSNPLSGTFEECGYNEVPSKWNANKFPKAPENDGTCQPYSSVANLDPNEWATSNVANMANYAHYSSTFSKELSLSLATSTAAGQCSNVTCSNMTPCMNGTISCSSSREISMNLGGNKYAQISPEVLESRYLLGIQEILAQIARYSFQNLEQLNYSATGNRAGGHKSTSAFPPKRNILTDHNASSVYESHAESPLQRQAAESKKAQLLALLQLVDSRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISVLYKDLRERISNYILAMGSSFKKSCTEDSEWSIESSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDSEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEEIQNTHGNRISMSNQRFNVN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03161 562 Pfam Homeobox KN domain 480 519 IPR008422 GO:0003677|GO:0006355
Vimu10g03161 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 208 543 - -
Vimu10g03161 562 CDD homeodomain 463 524 IPR001356 GO:0003677
Vimu10g03161 562 Gene3D - 466 546 - -
Vimu10g03161 562 SMART prehox3 277 421 IPR006563 -
Vimu10g03161 562 Pfam Associated with HOX 283 420 IPR006563 -
Vimu10g03161 562 SUPERFAMILY Homeodomain-like 465 532 IPR009057 -
Vimu10g03161 562 ProSiteProfiles 'Homeobox' domain profile. 460 523 IPR001356 GO:0003677
Vimu10g03161 562 SMART HOX_1 463 527 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03161 Vimu-Chr10 42184146 42186290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03161 229 536 Homeobox Transcription Factor Family AT4G32980 56.270 2.38e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu10g03161 POX 2.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03161 - - gmx:100820354 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03161 10 42184146 42186290 Vimu10g03161 10 42184146 42186290 ECH
Vimu1g02845 1 40749297 40752576 Vimu10g03161 10 42184146 42186290 PCT