Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03157 ATGGGAATAGCCAGAAAATGTTCATATTGTGGAAAATTAGGTCACAATTCAAGGACTTGTAAAAGTCCTCTCGGTCATGGATACCTGAAGCTCTTTGGAGTGCAGCTTGACATTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTACTATTTCTTTTTCTTCACCTTCATATTCTGCCATGACCAACCACTTCTTCTCTTCATCTCCTTCCCTTCGTCATGAAAATCAAAATTCAGATGCTTACTTACTCACTGCCAATACCCTCCTATCGAGAATTCAAGACACAAAAAAAGGTTATTTTTCTCACTTCGATCATCTGTTATTTTCTTTTCCATTTGTTTTCAGGAGAAAATCATGTGTATGTGTGGCATGGACAGAGGAAGAACACAGGGTGTTTCTCTTAGGGCTACAGAAGCTGGGGAAGGGAAACTGGAGAGACATATCGAAAAGTTTTGTGAAAACAAGAACACCTGTGCAAGTTGCAAGTCATGCACAGAAGTATTTTCTCCGACAATCTCACAAAACAAAACACCCTCGTACCTTGTTCCATCTCCCTTCCTTTTCATCTTCATCTAATTCCACTGCTCAGATGCCACACCCAGATTTAGAACTCAAACTCGCAACTCCCACGCCATTCGAGCTATATATAGCAGATGCATGA 660 0.403 MGIARKCSYCGKLGHNSRTCKSPLGHGYLKLFGVQLDISSSSSSSSSSTISFSSPSYSAMTNHFFSSSPSLRHENQNSDAYLLTANTLLSRIQDTKKGYFSHFDHLLFSFPFVFRRKSCVCVAWTEEEHRVFLLGLQKLGKGNWRDISKSFVKTRTPVQVASHAQKYFLRQSHKTKHPRTLFHLPSFSSSSNSTAQMPHPDLELKLATPTPFELYIADA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03157 219 PANTHER TRANSCRIPTION FACTOR KUA1 5 189 - -
Vimu10g03157 219 CDD SANT 123 168 IPR001005 -
Vimu10g03157 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 172 IPR017930 -
Vimu10g03157 219 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Vimu10g03157 219 SUPERFAMILY Homeodomain-like 122 172 IPR009057 -
Vimu10g03157 219 FunFam transcription factor MYB1R1 122 173 - -
Vimu10g03157 219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 171 IPR006447 GO:0003677
Vimu10g03157 219 Gene3D - 124 173 - -
Vimu10g03157 219 SMART sant 120 170 IPR001005 -
Vimu10g03157 219 ProSiteProfiles Zinc finger CCHC-type profile. 5 22 IPR001878 GO:0003676|GO:0008270
Vimu10g03157 219 ProSiteProfiles Myb-like domain profile. 124 168 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03157 Vimu-Chr10 42171443 42173253 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu10g03157 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03157 - - pvu:PHAVU_009G077300g 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03157 10 42171443 42173253 Vimu10g03157 10 42171443 42173253 ECH