Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03154 ATGACTCTCATTCAAGACAATGCTGTCTCCACAGAAGAAAAAGCTCTCACTCTTATGCTCCAAGAGATTCTCACTGACTCTGACTCCGAGAGCGATGTGGGACAATCCTGTTTCAAGGAAGAAACAATAGAAAAGGTCATGCAAGAGCTTTACAAAGAAATCATTGTTTCTGCACCTTCCCCTGAATCACCTCCTCCAACACTCACGCTATCTTCAAATGTTTCTCTCGTGGAACAGGAAGACCAGCAGGATGAGCTTGTGGAGTTTGAAGTTGCCCAGAAGACTGAGGAAGAGGAGTTCAAGGATTTCGATGATGAGTGGCTTGCAAGGGTGCTTAGTTGGAGTCAGGATGTGAAGTTTGTATTTCGTGGTGGATCATCAGATAATCAGCAAGTGTGCAATGCATGGTCCACTCAACCTAAGTTGGTTATGGCAGATCAAAATAGCAGCGCGTGTGGCCACCTAGCAGAAGTGGAAATAGAGGACCAAGAGAACAGAAGAGAAAATCACGAGTACGAAAAACTTTTGTCTTCGAATGTGAGCTTGACGAGAAAAATGATGAGCCCACCTAACAATAATTTAGCCACAAAGAAAGCATTCGATAAAATTAGGGTTTGTGCAGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGAGGAAGGCGAGAAGGGCTATGGCAGAAGCTGCGAATAGTTCGGTGGATGCAAAGTCCAGACTGCATCATCAGAAGGAAAAGAAGTGTCGTAGAAACCATTTTGCAGGGTTCAAGAATAAGTTCAAGACTGCTAGAGGAACATTATCCGAGGAGCAGAAAGTGAGGATTGATTTGAAGGATTTTTCTATAAGTTTGAGGGATGATTCATCTTTGAAGCAAGAGTTTCCAATGGATGAAGTAGCTCAAGCAGCGATGCTTCTTATGGATTTATCTAGAGGCTTTCTTTACTTATAA 969 0.4324 MTLIQDNAVSTEEKALTLMLQEILTDSDSESDVGQSCFKEETIEKVMQELYKEIIVSAPSPESPPPTLTLSSNVSLVEQEDQQDELVEFEVAQKTEEEEFKDFDDEWLARVLSWSQDVKFVFRGGSSDNQQVCNAWSTQPKLVMADQNSSACGHLAEVEIEDQENRRENHEYEKLLSSNVSLTRKMMSPPNNNLATKKAFDKIRVCADCNTTSTPLWRSGPNGPKRKARRAMAEAANSSVDAKSRLHHQKEKKCRRNHFAGFKNKFKTARGTLSEEQKVRIDLKDFSISLRDDSSLKQEFPMDEVAQAAMLLMDLSRGFLYL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03154 322 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 129 320 - -
Vimu10g03154 322 SMART GATA_3 200 241 IPR000679 GO:0006355|GO:0043565
Vimu10g03154 322 Gene3D - 201 257 IPR013088 GO:0006355|GO:0008270
Vimu10g03154 322 ProSiteProfiles GATA-type zinc finger domain profile. 204 223 IPR000679 GO:0006355|GO:0043565
Vimu10g03154 322 Pfam GATA zinc finger 206 225 IPR000679 GO:0006355|GO:0043565
Vimu10g03154 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03154 Vimu-Chr10 42154801 42161335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03154 201 321 C2C2-Gata Transcription Factor Family AT5G49300 34.711 5.39e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu10g03154 GATA 4.8e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03154 - - pvu:PHAVU_009G077500g 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03154 10 42154801 42161335 Vimu10g03154 10 42154801 42161335 ECH
Vimu1g02832 1 40619506 40621359 Vimu10g03154 10 42154801 42161335 PCT