Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03146 ATGAGCGCAGAGGATGATGACTCAGAGGGGAAAAGATTGAAACTTCGGCAAGATAAGGTGTTCGATTGTGGTGTGAAGAATTTCCAGCGCGATCTGGTGGCTGGGGCGTTGATGGGCGGTGTGGTGCATACGATTGTTGCCCCAATTGAGAGGTCGAAGCTGTTGCTGCAGACTCAGGAGAGCAATTTGGCCATTGTGGCGAGTGGGCGTCGCAGATTCAAGGGCATGTTTGATTGCATAGCCCGTACTGTCAGGGAAGAGGGCATTCTCTCTTTGTGGCGAGGTAATGGCAGCAGTGTTATTCGTTACTATCCTTCTGTGGCCCTCAACTTCTCTCTCAAGCTGCCAGCTGTTAACTTTCTGTTATTTCTCTCTTCTCGGGTTTTGATTGGCTGCATCACCCTTGTATCTCCTTCTATTCACGTATTTGACTCTGGGATTCAATTGCAAGGCATGGGACTTGAGTCCCCTACATTGGAGTTATGGGATTCGTGTGTGGGGTTGATAAGGCCTTGGCTCTTTAACTATAATGTCTACTTTTTGTGGTGTGGTTCTCCTAAGTGTTCACCTCAAAGTATTAAAAAGGCTAGTGCAACGGATGTGGAACATGCTCTTCAACCACACGGCAAGAGTTTGTGGTCAAGTTCTCCTAAGATTCTTATCATAGTCTTTCCTCCCACCCTTTCATGTGGTATAAAGTCTGATCTTTACAAAAGCATTTTAAGGGGTGGAAACTCTAGTGATAATTATCTTTTGACAGGTGCCACTGCAAATTTCGTGGCTGGTGCTGCAGCCGGTTGCACAACACTTGTACTGGTATACCCCCTTGACATAGCACACACGCGCCTTGCTGCAGACATTGGAAGCACTGAAGTGCGCCAATTTCGAGGTATTTTCCATTTCTTGGCTACCATATTCCACAAGAATGGCGTTCGCGGAATCTACAGGGGCCTTCCTGCATCTCTTCAAGGGATGGTGGTACACAGGGGCATATATTTTGGAGGTTTTGATACCATGAAAGAGATATTGTCTGAAAAATCAAAACCGGAGTTGGCGTTGTGGAAGCGTTGGGTAGTAGCTCAGGCAGTCACAACTTCTGCCGGGTTGATATCTTATCCGTTAGACACGGTTCGTAGGAGGATGATGATGCAATCTGGCATGGAACAGCCAATGTATGATAGCACCCTTGACTGCTGGAGGAAGATGTACAGGAATGAAGGGCTGGCTTCATTTTACCGTGGTGCAGTTTCTAATATGTTTAGGAGCACAGGAGCAGCTGCTATCTTAGTGTTGTATGATGAGATTAAGAAATTTATGAACTGGGGAAGTTTCTAA 1335 0.4637 MSAEDDDSEGKRLKLRQDKVFDCGVKNFQRDLVAGALMGGVVHTIVAPIERSKLLLQTQESNLAIVASGRRRFKGMFDCIARTVREEGILSLWRGNGSSVIRYYPSVALNFSLKLPAVNFLLFLSSRVLIGCITLVSPSIHVFDSGIQLQGMGLESPTLELWDSCVGLIRPWLFNYNVYFLWCGSPKCSPQSIKKASATDVEHALQPHGKSLWSSSPKILIIVFPPTLSCGIKSDLYKSILRGGNSSDNYLLTGATANFVAGAAAGCTTLVLVYPLDIAHTRLAADIGSTEVRQFRGIFHFLATIFHKNGVRGIYRGLPASLQGMVVHRGIYFGGFDTMKEILSEKSKPELALWKRWVVAQAVTTSAGLISYPLDTVRRRMMMQSGMEQPMYDSTLDCWRKMYRNEGLASFYRGAVSNMFRSTGAAAILVLYDEIKKFMNWGSF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03146 444 PRINTS Adenine nucleotide translocator signature 73 94 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu10g03146 444 PRINTS Adenine nucleotide translocator signature 356 372 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu10g03146 444 PRINTS Adenine nucleotide translocator signature 28 40 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu10g03146 444 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 120 IPR018108 -
Vimu10g03146 444 SUPERFAMILY Mitochondrial carrier 26 122 IPR023395 -
Vimu10g03146 444 Gene3D Mitochondrial carrier domain 195 441 IPR023395 -
Vimu10g03146 444 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 25 442 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu10g03146 444 SUPERFAMILY Mitochondrial carrier 221 434 IPR023395 -
Vimu10g03146 444 ProSiteProfiles Solute carrier (Solcar) repeat profile. 355 438 IPR018108 -
Vimu10g03146 444 Gene3D Mitochondrial carrier domain 25 133 IPR023395 -
Vimu10g03146 444 PRINTS Mitochondrial carrier protein signature 44 58 IPR002067 GO:0055085
Vimu10g03146 444 PRINTS Mitochondrial carrier protein signature 95 115 IPR002067 GO:0055085
Vimu10g03146 444 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Vimu10g03146 444 PRINTS Mitochondrial carrier protein signature 262 284 IPR002067 GO:0055085
Vimu10g03146 444 ProSiteProfiles Solute carrier (Solcar) repeat profile. 253 342 IPR018108 -
Vimu10g03146 444 Pfam Mitochondrial carrier protein 255 346 IPR018108 -
Vimu10g03146 444 Pfam Mitochondrial carrier protein 27 113 IPR018108 -
Vimu10g03146 444 Pfam Mitochondrial carrier protein 352 440 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03146 Vimu-Chr10 42109496 42115993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03146 211 441 Antiporters AT5G17400 35.443 1.76e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03146 K05863 - gmx:100797251 381.719