Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03144 ATGAAGGGAGGTATAGTGAAAGAGGAAGAAACACTCGCATTTGCAGCTGCTGCTGCTTCTTCACCTTCATCCTCAACTTCCAACCTCTTCCCGCAACCAAGGGAAGGGTTGCACGATGTGGGTCCACCTCCGTTTCTCACCAAAACCTTCGACGTCGTCGAAGACCCTTCTACTGACGACATCGTTTCCTGGAGCAGAGCACGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACTACCATCTTGCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTCTGGCGGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTAGCACAGACGCAGTCACATGATGGAGGAAATGGAGCTTGCGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTTTTGATGGCTGAGATTGTGAAGTTGAGGCAACAACAGCACAATTCAAGGGAGCAATTGTTGTCCATGGAGAGCAGATTGCAAGTCAGCGAGAAGAAACATCAGCAGATGATGACTTTTCTTGCTAAGGCACTCAACAATCAGACTTTTATTCAGCATTTCCTTCACAGGAACGCTCAGAAGATAGAGTTGCAAGGTGCTAGAAGAAAGAGGAGACTGACTGCTTCCCCAAGCGTGGAGAATTTGCAGCAAGATCCGGTGATTGATGCGGCATTGCCAGTTGAAGAGGAATCTACTAATATTGAGTCGCACATGGAGTCTCTTCTCTCAGCTGTTTGTGACGATGATCCATTAGAATCGAGCTCTGAATTAGAAGACCCGATTTTAGGTTCAGTTCCTACAACTGGTGGTGGTAGTGATTTGGGGGTGGTAAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTGCGAACCATGAGGAGGAAGTTGTGATTGGTGATTTTTCACAAGTTGACGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGAGTGGAGTGAGGATTTGCAGAATCTTGTGGATCATATGGGTTATCTTGCGTCCAAACCCTAG 1131 0.4721 MKGGIVKEEETLAFAAAAASSPSSSTSNLFPQPREGLHDVGPPPFLTKTFDVVEDPSTDDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVAQTQSHDGGNGACVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSREQLLSMESRLQVSEKKHQQMMTFLAKALNNQTFIQHFLHRNAQKIELQGARRKRRLTASPSVENLQQDPVIDAALPVEEESTNIESHMESLLSAVCDDDPLESSSELEDPILGSVPTTGGGSDLGVVSDAIWEDLLNQDLVAANHEEEVVIGDFSQVDVPVEDLVADPDEWSEDLQNLVDHMGYLASKP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03144 376 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vimu10g03144 376 Coils Coil 162 182 - -
Vimu10g03144 376 MobiDBLite consensus disorder prediction 286 305 - -
Vimu10g03144 376 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g03144 376 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g03144 376 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g03144 376 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g03144 376 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g03144 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 264 IPR027725 -
Vimu10g03144 376 FunFam Heat shock transcription factor 1 38 135 - -
Vimu10g03144 376 Gene3D - 38 135 IPR036388 -
Vimu10g03144 376 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03144 Vimu-Chr10 42088026 42089375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03144 31 376 HSF AT2G26150 51.143 8.97e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu10g03144 HSF_DNA-bind 1.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03144 K09419 - gmx:100794605 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03144 10 42088026 42089375 Vimu10g03144 10 42088026 42089375 ECH
Vimu1g02810 1 40407944 40410218 Vimu10g03144 10 42088026 42089375 PCT