Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03142 ATGGTGTTTATACAGTGGCTTAGAGAAAATATAATTTTTGAATTTGTTATTATTATTATGATGATGAAGATGAAGATGAGAGATAATGGAGGCTTGCTCCTATATCTGTATGCACCTTATTGGGGTGTAAGGAAGGTTCCAGCTCCACCTTCTCTGCCTCTTATAGGACACCTTCCATTGCTGGCTAAATATGGCCCTGATGTCTTCTCAGTCCTTGCCAAACAATATGGTCCCATTTACAGGGACTCACAATGGTCTACCATGCGAAACACTATACTATCGATCTACCAACCATCACACTTATCCGGATTAGTGCCACTGATGCAGTCTTTCATAGAATCTGCCACTGAAAACCTTGACTCTGAAAAAGAAGACATTGTTTTTTCCAACTTGTCCCTCAGACTTGCAACTGATGTGATTGGGCAGGCAGCATTTGGTGTAAACTTTGGTCTTTCTAGACCCAATTCAGTCTGTGATTCTATCAAGAGTCTTGACACTGACCCTGCAAGTCCTGCTAATGACAATGAAGTATCGGATTTCATCAACCAGCACATATACTCCACTACACAACTCAAGATGGACTTGTCTGGTTCCTTTTCCATTATATTGGGTCTGCTTTTGCCAATACTTCAAGAGCCGTTTAGGCAAATTCTCAAGAGAATTCCAGGAACCATGGACTGGAAGATTGAGCGTACAAACCAAAAACTAAGTGGCCGTCTTGATGAGATTGTAGAAAAAAGAATGAAAGATAAGACCCCAAGTTCAAAGGATTTCTTGTCACTCATACTTAATGCCAGAGAAACAAAAGCAGTTTCAGAGAATGTATTCACACCAGACTACATCAACGCAGTTACTTACGAGCATCTGCTTGCTGGTTCAGCTACCACCTCCTTTACCTTGTCTTCTGTTATCTATTTGGTTGCTGGACATCCTCAAGTTGAGAATAAATTGCTTCATGAGATAGATGCCTTTGGTCCTGTCGATAAGATTCCGACTTCTCAAGATCTTCGTGACAACTTCCCTTATCTTGATCAGGTGATCAAAGAGGCAATGAGATTTTACACTGTATCTCCATTAGTTGCAAGAGAAACATCAAATGAAGTGGAGATTGGGGGCTATCTTCTCCCAAAGGGTACTTGGGTGTGGTTAGCACTTGGAGTTGTTGCAAAAGATCCCAAGGACTTTCCAGAGCCAGAAAAGTTCAAACCAGAGAGGTTTGACCCCAACTCTGAAGAAATGAAACGAAGGCATCCTTATGCTTTTATACCATTTGGAATTGGTCCTCGGGCATGCATTGGTAAACAATTTTCCTTACAAGAGATCAAGCTTTCTCTCATTCATTTATATCGGAAATACTTGTTTCGGCATTCACCCAATATGGAAAACCCCTTGGAACTCCAGTATGGGATAGTCCTCAACTTCAAGCATGGGGTCAAGCTCAGAGCCATAAAACGAACATAA 1461 0.4127 MVFIQWLRENIIFEFVIIIMMMKMKMRDNGGLLLYLYAPYWGVRKVPAPPSLPLIGHLPLLAKYGPDVFSVLAKQYGPIYRDSQWSTMRNTILSIYQPSHLSGLVPLMQSFIESATENLDSEKEDIVFSNLSLRLATDVIGQAAFGVNFGLSRPNSVCDSIKSLDTDPASPANDNEVSDFINQHIYSTTQLKMDLSGSFSIILGLLLPILQEPFRQILKRIPGTMDWKIERTNQKLSGRLDEIVEKRMKDKTPSSKDFLSLILNARETKAVSENVFTPDYINAVTYEHLLAGSATTSFTLSSVIYLVAGHPQVENKLLHEIDAFGPVDKIPTSQDLRDNFPYLDQVIKEAMRFYTVSPLVARETSNEVEIGGYLLPKGTWVWLALGVVAKDPKDFPEPEKFKPERFDPNSEEMKRRHPYAFIPFGIGPRACIGKQFSLQEIKLSLIHLYRKYLFRHSPNMENPLELQYGIVLNFKHGVKLRAIKRT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03142 486 PRINTS E-class P450 group I signature 135 153 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS E-class P450 group I signature 344 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS E-class P450 group I signature 421 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS E-class P450 group I signature 431 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS E-class P450 group I signature 384 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS E-class P450 group I signature 280 297 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS E-class P450 group I signature 300 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS P450 superfamily signature 345 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS P450 superfamily signature 422 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PRINTS P450 superfamily signature 291 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 424 433 IPR017972 GO:0005506|GO:0016705
Vimu10g03142 486 Pfam Cytochrome P450 83 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 Gene3D Cytochrome P450 35 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 SUPERFAMILY Cytochrome P450 39 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03142 486 PANTHER THROMBOXANE-A SYNTHASE 81 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03142 Vimu-Chr10 42075917 42082681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03142 81 485 Cytochrome P450 AT2G26170 72.593 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03142 K20771 - gmx:100797803 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03142 10 42075917 42082681 Vimu10g03142 10 42075917 42082681 ECH
Vimu1g02809 1 40392866 40394902 Vimu10g03142 10 42075917 42082681 PCT