Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03134 ATGCATACGGGGCTTGATGTAATCCAGCAAGCACAATCTGGAACTGGAAAAACTGCTACCTTTTGCTCTGGAGTTTTGCAGCAGCTTGATTACAGCTTAGTTGAGTGCCAGGCACTAGTTCTTGCACCTACTCGTGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCCCTAGGGGACTATCTAGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTTCGTGAAGATCAACGCATCCTTTCAAGTGGGATCTATGATATTTTTCAGCTACTGCCTCCTAAGATTCAGGTTGGGGTATTCTCTGCCACAATGCCTCCAGAAGCGCTGGAAATCACTAGGAAGTTTATGAACAAACCTGTGAGGATTCTTGTAAAACGTGATGAGCTTACTCTGGAGGGGATCAAACAGTTTTTTGTCAATGTAGACAAGGAGGAATGGAAGCTAGAGACACTATGTGATCTTTATGAAACTTTGGCAATCACCCAGAGTGTTATCTTTGTGAACACTAGACGCAAGGTAGATTGGCTGACAGACAAAATGCGGAATCGTGATCACACAGTTTCAGCCACCCACGGAGATATGGACCAAAACACAAGGGATATCATCATGAGGGAATTCCGCTCTGGGTCCTCCCGTGTTCTTATCACCACAGATCTTTTGGCCCGTGGAATCGACGTTCAACAAGTCTCACTTGTTATAAATTATGATCTGCCAACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGAAAGGGTGTTGCTATCAATTTTGTGACCAGTGATGATGAAAGGATGCTGCTTGACATCCAAAAGTTCTATAATGTGATGGTTGAGGAGCTGCCGGCCAATGTAGCTGATCTCATTTGA 891 0.4512 MHTGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFFVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRNRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLLDIQKFYNVMVEELPANVADLI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03134 296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 277 IPR027417 -
Vimu10g03134 296 SMART ultradead3 1 139 IPR014001 -
Vimu10g03134 296 SMART helicmild6 176 257 IPR001650 -
Vimu10g03134 296 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 124 IPR014001 -
Vimu10g03134 296 CDD SF2_C_DEAD 136 266 - -
Vimu10g03134 296 Gene3D - 1 86 IPR027417 -
Vimu10g03134 296 Pfam Helicase conserved C-terminal domain 149 257 IPR001650 -
Vimu10g03134 296 Gene3D - 87 131 IPR027417 -
Vimu10g03134 296 Gene3D - 132 296 IPR027417 -
Vimu10g03134 296 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 135 296 IPR001650 -
Vimu10g03134 296 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 78 - -
Vimu10g03134 296 Pfam DEAD/DEAH box helicase 4 90 IPR011545 GO:0003676|GO:0005524
Vimu10g03134 296 FunFam Eukaryotic initiation factor 4A-III 130 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03134 Vimu-Chr10 42027386 42030247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03134 4 296 Eukaryotic Initiation Factors Gene Family AT1G72730 81.306 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03134 K03257 - gmx:100806638 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03134 10 42027386 42030247 Vimu10g03134 10 42027386 42030247 ECH