Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03131 ATGTCTCTTCAATCAGGTGCCGCCCCGCCGCAGAACGTCACAATGGTAGCCGTCGACAAAGACAAGAACAATGTCACCAATGTGTTTCCACCCGACGAAGACGATGTACTCAATATTTTCAATTCCTTACGCGGAATCTGTACTCGCAAAGCTGTCACGATGAAAGAAGCCGTAATTGATGATGCCGATGTTGTGAGAGGACTTCTAGAGTTTGCTAACAGGAATCTCATACATAGTATTGTGGTCGGTGCATCTACCAAAAACCCTTTGTCAAGTCTCAAAAAACTTAAAGCCTATCAGTATCTGGATATACCAACAGCCATGATCAAATCAGCTCCGGATTTCTGCTCTGTTTACATAATTTCGAAATTGAAGATTATGTCTGCTCGATCAGCGGTACGGTCATTGTCAAAAAATTTAACTACACCGAAACTAATTCCTGTGCCGCCAAGTCCGCCCAGTCCAGATGGACCATTAAGGGGACAACTACCTAGAAGTAGGGGCACTTACGAAGTAGCAGCAGAACCAATGAGAATAACACATGCTAGAGAAAGACCAAAGAGTACGGGAAATGTTATATCAATAGACCACATTGAAATACCCGCTCGTCCACGAAATTGGTCAATGGATGAAAAAGAAATTTCATGGCTTGGGGATTTCAATAGAATTGACTCTGGTATATCAGAATCCATCCCCGTGTCATATTCTCCTCAATCCTCAAAAGAAATAGAAGCCGAGATGAGAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAACCAGGCGGAACAGATTCGTCAATGGAAACTGGAAGAGGATCGCAAGGTTGAGGTAGTTAGGATGTCTCAAGAGGCCGCTCTTGCAATTGCAGAAAAGGAGAAGGCTATAGCCATAGCTGCAATGGAAGCAGCTGAGGAGGCTAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGGAGAAGGCCAGGGCAGAGGCAGAAGAGAAAGAACGAGCAATATCTACGTTGATTCAAAATGATACCCGGTATAGAAGATACACCATAGAGGAGATTGAAATGGCCACAGAAAAGTTCTCCCCGTCAAAAAAAATTGGTGAAGGTGGGTACGGACCTGTTTATAAAGGCCACCTTGATCACACACCCGTTGCAATCAAAATTTTAAGGCCTGATGCCGCTCAGGGCATGAAGCAGTTCAACCAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCGGAGCATGGGTGCTTAGTGTATGAATATCTGGATAACGGTAGCTTAGAAGACAGATTGTTCCGGAAAAACAACAGCAGACCAATTCCATGGAAAAAACGGTTCGAAATATCTGCTGAGATAGCAACTGCACTCCTTTTCCTCCACCAAAACAAGCCAGAACCCATCGTGCACAGAGACCTCAAACCATCTAACATTCTCGTAGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCACGTTTAGTCCCTCCTTCAGTAGCTGATACTGTGACACAATCTTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCCGAGTATCAACAAACGGGGATTCTAACACCAAAGTCAGATATATATTCTCTGGGGATAATGCTACTTCAGATAATCACAGGCAAGCCTCCCATGGGCCTTGCTCACCTAGTTAGGAAGGCCGTTGAAAAGGGCAGGTTTGAAGAAGTGCTGGACCCTGTGATCACAGATTGGCCGGTGGAAGAGGCTCTATCATATGCCAAATTAGCATTGCAGTGTGCCCAACTCAGCAAGAAGGACAGACCAATTCTTGCAACGGAGATTTTGCCTGAGCTTAACAGGTTAAGCAGACTTGAATTGCCTCCTCAGAATGATCAATTTTCTTTAAGCAGTAATGATAATCTATAG 1983 0.4463 MSLQSGAAPPQNVTMVAVDKDKNNVTNVFPPDEDDVLNIFNSLRGICTRKAVTMKEAVIDDADVVRGLLEFANRNLIHSIVVGASTKNPLSSLKKLKAYQYLDIPTAMIKSAPDFCSVYIISKLKIMSARSAVRSLSKNLTTPKLIPVPPSPPSPDGPLRGQLPRSRGTYEVAAEPMRITHARERPKSTGNVISIDHIEIPARPRNWSMDEKEISWLGDFNRIDSGISESIPVSYSPQSSKEIEAEMRRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLEEDRKVEVVRMSQEAALAIAEKEKAIAIAAMEAAEEARRRAEQEAQRRKDAEEKARAEAEEKERAISTLIQNDTRYRRYTIEEIEMATEKFSPSKKIGEGGYGPVYKGHLDHTPVAIKILRPDAAQGMKQFNQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYLDNGSLEDRLFRKNNSRPIPWKKRFEISAEIATALLFLHQNKPEPIVHRDLKPSNILVDRNYVSKISDVGLARLVPPSVADTVTQSYMTSAAGTFCYIDPEYQQTGILTPKSDIYSLGIMLLQIITGKPPMGLAHLVRKAVEKGRFEEVLDPVITDWPVEEALSYAKLALQCAQLSKKDRPILATEILPELNRLSRLELPPQNDQFSLSSNDNL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03131 660 SUPERFAMILY Protein kinase-like (PK-like) 354 634 IPR011009 -
Vimu10g03131 660 PANTHER OS02G0152300 PROTEIN 25 644 - -
Vimu10g03131 660 SMART serkin_6 374 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03131 660 Coils Coil 240 260 - -
Vimu10g03131 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Vimu10g03131 660 FunFam Os07g0541700 protein 447 537 - -
Vimu10g03131 660 MobiDBLite consensus disorder prediction 322 343 - -
Vimu10g03131 660 CDD STKc_IRAK 380 640 - -
Vimu10g03131 660 Pfam Protein kinase domain 376 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03131 660 Gene3D Phosphorylase Kinase; domain 1 342 446 - -
Vimu10g03131 660 Coils Coil 300 355 - -
Vimu10g03131 660 Gene3D Transferase(Phosphotransferase) domain 1 447 653 - -
Vimu10g03131 660 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 347 446 - -
Vimu10g03131 660 ProSiteProfiles Protein kinase domain profile. 374 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03131 Vimu-Chr10 42003910 42007490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03131 54 643 Receptor kinase-like Gene Family AT5G12000 56.913 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu10g03131 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03131 - - gmx:100798861 914.45