Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03126 ATGGATGTGTCCAGAATTAAGCTGATGACAGATGCAGGGTTGTTATCCAATTCTATAACTAAGGTTTCTACTGATAATACTTTTATTGCTGATGAGGATCTGGACAGTAATTGTCTCGGGGAGGAAGTTGGTAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGATGTTGGGTATGGTGTCCCAAAATATAAACTCTCTGGTTGTCGGTGATGCAATTATTGATAGTTCTCTTTCGGTAGCAAGCGAGAATAGTAGTTTTTGTGGGGATGAATTCATCGGTTCTGAGATTTCTGCAGATTTAGGGACAAGAAGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAACTGCTGCCAGGGCTACTGATTTGGGCGTGTCAAATGTAGTTGCAGATGTAGCAGTTAGCGTTGAAGAAGAGACAGGGGTTATATCTGGCCCAGAGCCTACTACAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTCTGTGGAAAAAGACCTGAGATGGAAGATGCACTTGCAACTGTACCTAGATTTTTGAAAATTCCTATTCAAATGCTAATCGGTGATAGGGTACCTGATGGCATAGACCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCTGTCAGAGAAGGTCTTTTAGTTGAAAGCACCAAGGATGATTGTCGAGATCTGTGGAAAAAAGCCTTCACCAGTTGCTTTTTGAAGGTTGATTCTGAAGTTGGGGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACTGCTGTTGTTGCTGTTATATGTTCATCTCATATTCCAAATCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGAGTTTTCGGTGTTCTCGCAATGTCAAGGTCAATTGGTATGAGCTTAATCAAAAGTTTAACTTTATTTCCTGTGGTGTAA 1107 0.421 MDVSRIKLMTDAGLLSNSITKVSTDNTFIADEDLDSNCLGEEVGSAAVTPPEKGRVEEIPMLGMVSQNINSLVVGDAIIDSSLSVASENSSFCGDEFIGSEISADLGTRSSIEIEKSINTVKTAARATDLGVSNVVADVAVSVEEETGVISGPEPTTERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLIGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIPNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGMSLIKSLTLFPVV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03126 368 Pfam Protein phosphatase 2C 215 318 IPR001932 -
Vimu10g03126 368 SUPERFAMILY PP2C-like 172 360 IPR036457 -
Vimu10g03126 368 Gene3D - 164 316 IPR036457 -
Vimu10g03126 368 CDD PP2Cc 179 355 IPR001932 -
Vimu10g03126 368 Gene3D - 317 366 IPR036457 -
Vimu10g03126 368 ProSiteProfiles PPM-type phosphatase domain profile. 177 368 IPR001932 -
Vimu10g03126 368 PANTHER PROTEIN PHOSPHATASE 146 360 IPR015655 GO:0004722|GO:0006470
Vimu10g03126 368 ProSitePatterns PPM-type phosphatase domain signature. 228 236 IPR000222 GO:0043169
Vimu10g03126 368 SMART PP2C_4 167 368 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03126 Vimu-Chr10 41978836 41980262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03126 80 355 PP2C-type Phosphatase Gene Family AT1G72770 44.000 7.51e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03126 K14497 - gmx:102662702 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03126 10 41978836 41980262 Vimu10g03126 10 41978836 41980262 ECH
Vimu10g03126 10 41978836 41980262 Vimu1g02717 1 39200352 39203567 ECH