Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03124 ATGAAACAGCAACACGCACCTTCGCCTACAGTCACGGAACCAGATCTCGCCACGGAATATACTGGGAATGCTCCTGCTGAAGATGAGAGGGAGGTGCAGGGGATTAGGATGAGTGCTAGACAACGCTCACAGCGGGGGGAGAGAGAGAGACAGAGAGAGAAAGATATGGAGGATCTCGAGGAGGAAGAGAACGTAGCGGAGGAGGTGTTGGGGTCAAGCTTGACCATGGAGAAGGTGGCGGCGGCGAAGAAGTTTATTGAGAATCATTATAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGTTGGGTGTTAGAAAGAAAACTAGCATCTTCGGATGTGCCAAATGAGGAGCGGATCAACCTTATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGATTGAAAAGGCACAAGATTTGTGTTGATGATTTTGAACTTTTGACCATCATTGGAAGGGGGGCTTTTGGGGAGGTCAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCTATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTTGCCAGTCATTGCATTGTGAAGCTTTACTACTCATTTCAGGATGCTGAGTACTTGTACTTGATTATGGAGTATCTGCCTGGCGGTGACGTTATGACTCTGCTGATGAGGGAAGACACCTTAAGTGAAAATGTTGCTAGATTTTATATTGCACAAAGTGTTCTGGCCATAGAATCTATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTCGACTGTATTGCCTTGTCTACACTGCATGAAAATCAGACGATGGATGATGAGACTTTGGCAGAGCCAATGGATGTTGATGGATGTTTGCGTGATGCGGACAATCGGAGCAGCTGGAGAAGTCCTCGTGAACAGCTTCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACGGTGGGGACACCGGACTACATTGCTCCTGAAGTACTTCTGAAAAAAGGCTATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTACGAAATGCTGGTTGGTTACCCTCCATTTTACTCCGATGACCCAATAACCACTTGCAGAAAGATTGTTCACTGGAGAAATCATTTAAGATTTCCTGAAGATTCCCAGTTAACACTTGAGGCCAAGGATCTAATTTATAGGTTGCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCCCAAGAAATAAAGGCTCATCCTTGGTTCCATGGTGTGGAGTGGGAGAAACTCTATGAAATGGAGGCAGCATTTAAACCTCAAGTCAACGGGGAGCTGGATACCCAAAACTTCATGAAGTTTGATGAGGGATTAGGGGTGTGGATCCACCAACAGCGGCAAGAAGTGGGTCTGGATCCTCACGAAAGAAGGGACAATTGGCATCAGGATAGTGGAGATGAGGGTGTGTCAATGACAGGAAAGGACATGTAG 1587 0.4556 MKQQHAPSPTVTEPDLATEYTGNAPAEDEREVQGIRMSARQRSQRGERERQREKDMEDLEEEENVAEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDVMTLLMREDTLSENVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCIALSTLHENQTMDDETLAEPMDVDGCLRDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDSQLTLEAKDLIYRLLCDVDHRLGTRGAQEIKAHPWFHGVEWEKLYEMEAAFKPQVNGELDTQNFMKFDEGLGVWIHQQRQEVGLDPHERRDNWHQDSGDEGVSMTGKDM 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03124 528 ProSiteProfiles AGC-kinase C-terminal domain profile. 456 528 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu10g03124 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 487 - -
Vimu10g03124 528 MobiDBLite consensus disorder prediction 504 528 - -
Vimu10g03124 528 FunFam Non-specific serine/threonine protein kinase 109 231 - -
Vimu10g03124 528 FunFam Non-specific serine/threonine protein kinase 474 484 - -
Vimu10g03124 528 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Vimu10g03124 528 FunFam Non-specific serine/threonine protein kinase 232 299 - -
Vimu10g03124 528 FunFam Non-specific serine/threonine protein kinase 354 473 - -
Vimu10g03124 528 SUPERFAMILY Protein kinase-like (PK-like) 145 488 IPR011009 -
Vimu10g03124 528 Gene3D Phosphorylase Kinase; domain 1 119 231 - -
Vimu10g03124 528 CDD STKc_NDR_like 146 512 - -
Vimu10g03124 528 Pfam Protein kinase domain 149 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03124 528 Pfam Protein kinase domain 347 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03124 528 Gene3D Transferase(Phosphotransferase) domain 1 232 297 - -
Vimu10g03124 528 Gene3D Transferase(Phosphotransferase) domain 1 353 475 - -
Vimu10g03124 528 ProSiteProfiles Protein kinase domain profile. 148 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03124 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vimu10g03124 528 MobiDBLite consensus disorder prediction 1 64 - -
Vimu10g03124 528 CDD MobB_NDR_LATS-like 82 143 - -
Vimu10g03124 528 SMART serkin_6 148 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03124 528 MobiDBLite consensus disorder prediction 1 17 - -
Vimu10g03124 528 MobiDBLite consensus disorder prediction 24 57 - -
Vimu10g03124 528 Coils Coil 49 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03124 Vimu-Chr10 41961319 41970423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03124 56 488 AGC Kinase Gene Family AT4G33080 84.598 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vimu10g03124 Pkinase 9.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03124 K08790 - gmx:100815717 845.499