Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03121 ATGAGTGGTGATAATCCAAAAGCACCAAATTCACCTGAGAGTGATTTCACCAAGCAATGGCCTTCGGAGCTCCCCGAGTACCTGAATTTAGATGATGATCAATGGTCATACGATGACCTCGAGTCATTTGTTTCGGGGCATGCTTTCAGCCATAAGACTGAAGCCAATGAAGTTGGTGAGCTTGGAGGAAGTAGCACCCACCATGAAGAGAACTACTACAGGTGTTCAGTGGAAGGATGTTCAGTGAAGAAGGTAGTTGAAAGGGACAAGGATGATCCGAGTTATGTAATAACAACCTACGTAGGCACCCATACTCATCCGAGTTACAGTTAA 333 0.4505 MSGDNPKAPNSPESDFTKQWPSELPEYLNLDDDQWSYDDLESFVSGHAFSHKTEANEVGELGGSSTHHEENYYRCSVEGCSVKKVVERDKDDPSYVITTYVGTHTHPSYS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03121 110 Gene3D WRKY domain 57 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g03121 110 MobiDBLite consensus disorder prediction 1 21 - -
Vimu10g03121 110 ProSiteProfiles WRKY domain profile. 68 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g03121 110 Pfam WRKY DNA -binding domain 66 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g03121 110 MobiDBLite consensus disorder prediction 1 18 - -
Vimu10g03121 110 SMART WRKY_cls 64 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g03121 110 SUPERFAMILY WRKY DNA-binding domain 65 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g03121 110 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 107 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03121 Vimu-Chr10 41938100 41939256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03121 68 108 WRKY Transcription Factor Family AT5G26170 70.732 4.24e-16 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g03121 WRKY 1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03121 - - gmx:100819462 148.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03121 10 41938100 41939256 Vimu10g03121 10 41938100 41939256 ECH