Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03115 ATGAGTTTGGGCACCGCCGAGGACGATTCGGGTTCTGAAATCCATATCCCGGCGGAGATTGACTGGCATATGTTGGATAAGTCCAAGTTTTTCTTCCTGGGTGCCGCCTTATTCTCCGGTGTTTCTTTCACGCTCTACCCCATGGTCGTGTTGAAGACGCGCCAGCAGGTTTCCTCCTCACGCTTCTCCTGCTTCAACATGTCCCGCGCCATTATGCGCTACGAGGGTCTCAGAGGCTTCTACAAAGGCTTCGGCACTTCCCTCATGGGAACCGTACCCGCGCGTGCCCTCTATATGGGGTCTCTTGAAGTTACTAAAAGTAACGTTGGTACAGCTTTTCTCGAATTGGGGTTCTCCGAGACGACGGCTGTGGCGGTGGCTAATGCTGCCGCGGGTGTTACTTCCGCCATGGCAGCACAGCTGGTGTGGACCCCGGTTGATGTGGTTAGTCAACGGCTCATGGTTCAGGGGAGTGGAGGGAGTAAAACCATTCTGGCGAATCTTAATTCGGAGAGTTACAGGAACGGGTTTGACGCGTTCAGGAAGATTCTATGTGCTGATGGAGCAAGAGGGTTCTACAGAGGGTTTGGGATTTCGATATTGACTTATGCTCCTTCCAATGCGGTTTGGTGGACTTCTTATTCAATGGTTCACAGACTCATCTGGAGTGCTTTTGGTTCTTACTTGAGTAGTAAGGGTAAAAGTGAAAGCAACGATAATTTGAGTGGTGTTAGGCCTAATTCGAAGACAATGGTGGCAGTTCAAGGGCTGAGTGCGGTTATGGCCAGTGGGGTCTCAGCAATTGTGACAATGCCTCTCGATACCATAAAGACAAGATTGCAGGTGTTGGACAACGAAGAGCATGGGAGAAGGAGACCATTAACTTTTGTTCAGACGGTGAGGAATTTGGTGAAGGAAGGTGGATTGCCCGCTTGTTACAGAGGATTGGGACCAAGATGGGCTTCCATGTCATTGTCTGCTACAACTATGATTACTACCTACGAGTTTTTGAAAAGAATGTCTACCAAGAGTCAATAG 1038 0.4952 MSLGTAEDDSGSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSFTLYPMVVLKTRQQVSSSRFSCFNMSRAIMRYEGLRGFYKGFGTSLMGTVPARALYMGSLEVTKSNVGTAFLELGFSETTAVAVANAAAGVTSAMAAQLVWTPVDVVSQRLMVQGSGGSKTILANLNSESYRNGFDAFRKILCADGARGFYRGFGISILTYAPSNAVWWTSYSMVHRLIWSAFGSYLSSKGKSESNDNLSGVRPNSKTMVAVQGLSAVMASGVSAIVTMPLDTIKTRLQVLDNEEHGRRRPLTFVQTVRNLVKEGGLPACYRGLGPRWASMSLSATTMITTYEFLKRMSTKSQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03115 345 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 344 - -
Vimu10g03115 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Vimu10g03115 345 SUPERFAMILY Mitochondrial carrier 23 337 IPR023395 -
Vimu10g03115 345 Pfam Mitochondrial carrier protein 36 108 IPR018108 -
Vimu10g03115 345 Pfam Mitochondrial carrier protein 252 344 IPR018108 -
Vimu10g03115 345 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Vimu10g03115 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Vimu10g03115 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 340 IPR018108 -
Vimu10g03115 345 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Vimu10g03115 345 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Vimu10g03115 345 Gene3D Mitochondrial carrier domain 28 345 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03115 Vimu-Chr10 41884301 41886954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03115 1 345 Chloroplast and Mitochondria Gene Families AT1G72820 65.805 1.88e-161 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03115 K15121 - gmx:100784202 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03115 10 41884301 41886954 Vimu10g03115 10 41884301 41886954 ECH
Vimu10g03115 10 41884301 41886954 Vimu1g02778 1 40046765 40048070 ECH