Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03114 ATGGAAGAAAAGGACTGGCTATCCTTGGTTGCCGTGCACAGTGATACATGGTTAATTTCTGTGGCTATGTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGAGTCTTTTTAGTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTGCTGGGAAGGCCAAGAAACAAGGAAAGGAGAAGTCATCAGTCTCTAATCATGACAATAACAAATCTAAATCAAACTCTAAGAGAGGTTCTGAATCACAAGAAAAGTATTCAAAATCAATGGAACCAAAGAATGAGAGTGCTTTGGAAAAGGATGATGAGCACGGAGATGGATTATGCGGGGCATGTGGAGAGAACTATGCTCATGTTGCTGACGCTGACGAGTTCTGGATTGGCTGTGACATTTGTGAGAGGTGGTATCATGGGAAATGTGTGAGGATTACTCCTGCGAAGGCTCAGAATATCAAGGAGTACAAATGTCCATCTTGCAGCAACAAGAGAGTTCGTCAATAG 510 0.4098 MEEKDWLSLVAVHSDTWLISVAMYFGARFGFDKADRKSLFSMINDLPTIFEVVAGKAKKQGKEKSSVSNHDNNKSKSNSKRGSESQEKYSKSMEPKNESALEKDDEHGDGLCGACGENYAHVADADEFWIGCDICERWYHGKCVRITPAKAQNIKEYKCPSCSNKRVRQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03114 169 PANTHER CPG BINDING PROTEIN 1 169 IPR045104 GO:0006355|GO:0042393
Vimu10g03114 169 SUPERFAMILY FYVE/PHD zinc finger 104 166 IPR011011 -
Vimu10g03114 169 CDD PHD_AL_plant 111 165 IPR044104 -
Vimu10g03114 169 MobiDBLite consensus disorder prediction 60 105 - -
Vimu10g03114 169 FunFam PHD finger alfin-like protein 104 164 - -
Vimu10g03114 169 Pfam Alfin 1 54 IPR021998 GO:0006355|GO:0042393
Vimu10g03114 169 ProSitePatterns Zinc finger PHD-type signature. 112 162 IPR019786 -
Vimu10g03114 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 164 IPR013083 -
Vimu10g03114 169 ProSiteProfiles Zinc finger PHD-type profile. 109 165 IPR019787 -
Vimu10g03114 169 SMART PHD_3 111 163 IPR001965 -
Vimu10g03114 169 Pfam PHD-finger 112 165 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03114 Vimu-Chr10 41875788 41878798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03114 1 168 Alfin-like Transcription Factor Family AT3G42790 60.234 5.14e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu10g03114 PHD 8.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03114 K26274 - mnt:21387296 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03114 10 41875788 41878798 Vimu10g03114 10 41875788 41878798 ECH