Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03113 ATGGAGGCAGCCGTTGGAGCTCCGTCAAACCCTTCCGTCGAGGAAGTCTTCCTAGATTTCAAGGGCCGCAGAGCTGCCATTGTTAAGGCTCTCACCATTGATTACGAAGACTTCTATCAGCAATGTGATCCAGGTAAGGATGATCTTTGCCTTTATGGATTTCCTAACCAAGAGTGGCAAGTCCATCTACCTGCTGAGGAGGTGCCTGCTGAGATCCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGATGGGATGGCAGAACGGGACTGGGTATGCTTTGTTGCTGCGCACAGTGATACATGGCTAATATCTGTAGCTATGTTTTTTGGTGCAAGATTTGGGTTTGATAAGACTGATAGGGATCGTCTTTTTGATATGATGAATGATCTTCCAACAATATTCGAGGCTGTTGTTGGGAAGGTCAAGAAACAAGGAAAGAAAAAGTCACCAGTTTCTAATCATAACAACAACAAATCTAAATCAAACTCCAAGAAGGGTTCTGAATCTCAAGGAAATTATTCAAAAGCAATGGAATCAAAGGAAGAGGATTATTTGGAAGAGGAGGAAGAAGAACATGGAGAGACACTTTGTGGGGCATGTGGAGAGAACGATGATGTTGCTGGGTTCTGGATTTGCTGTGACATTTGCCAAAGGTGGTTTCATGGGAAATGTGTGAAGATTACTCGTGCTAAGGCTGACTATATCAAGCATTACAAATGCCCATCTTGCACCATCAAGAAGCTCGTTAATTGTAGTTTCTAG 765 0.4327 MEAAVGAPSNPSVEEVFLDFKGRRAAIVKALTIDYEDFYQQCDPGKDDLCLYGFPNQEWQVHLPAEEVPAEIPEPVLGINFARDGMAERDWVCFVAAHSDTWLISVAMFFGARFGFDKTDRDRLFDMMNDLPTIFEAVVGKVKKQGKKKSPVSNHNNNKSKSNSKKGSESQGNYSKAMESKEEDYLEEEEEEHGETLCGACGENDDVAGFWICCDICQRWFHGKCVKITRAKADYIKHYKCPSCTIKKLVNCSF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03113 254 SMART PHD_3 197 245 IPR001965 -
Vimu10g03113 254 MobiDBLite consensus disorder prediction 151 174 - -
Vimu10g03113 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 245 IPR013083 -
Vimu10g03113 254 PANTHER CPG BINDING PROTEIN 12 248 IPR045104 GO:0006355|GO:0042393
Vimu10g03113 254 MobiDBLite consensus disorder prediction 145 174 - -
Vimu10g03113 254 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Vimu10g03113 254 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Vimu10g03113 254 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Vimu10g03113 254 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Vimu10g03113 254 Pfam PHD-finger 198 246 IPR019787 -
Vimu10g03113 254 FunFam PHD finger alfin-like protein 190 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03113 Vimu-Chr10 41868207 41870735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03113 1 248 Alfin-like Transcription Factor Family AT3G42790 59.839 4.62e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g03113 Alfin 2e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03113 K26274 - mnt:21387296 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03113 10 41868207 41870735 Vimu10g03113 10 41868207 41870735 ECH
Vimu10g03113 10 41868207 41870735 Vimu11g03029 11 49903764 49912295 ECH
Vimu10g03113 10 41868207 41870735 Vimu4g00372 4 2643349 2647207 ECH
Vimu10g03113 10 41868207 41870735 Vimu1g02779 1 40056028 40060329 ECH