Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu10g03112 | ATTGAGTTAGAGGCCGAGAGTAAAAGGGCTTCTTCAGCTTTTAAACCCAATCGCCAATTTCAGATAAAGAGAATAAAAAAGATGACATTGAATGATCTGAGAGGTGTGTTCCATTTAACGATTAAGGATGCTGCTGCAGAAATAGGCGTATCAGTATCTGTGATAAAGGCAATTTGCCGCAGGGAAAGAATATCTTACTGGCCACAAAGGAAGGTGACAAGCTTGGCGAAGAGAGTGGAAGTACTGAAGAAAAGTTTGGATTCAGCAGATCCAGTGGTAAGGAAAACAAGTCGAGAGGATATTCAAACTTTTCAACGATTAATAATTGAGTGCTGTGGTGGAGTCACCCCAACAGGAATACAACTGCTGCAGTTCCAAGAACAATAG | 387 | 0.4109 | IELEAESKRASSAFKPNRQFQIKRIKKMTLNDLRGVFHLTIKDAAAEIGVSVSVIKAICRRERISYWPQRKVTSLAKRVEVLKKSLDSADPVVRKTSREDIQTFQRLIIECCGGVTPTGIQLLQFQEQ | 128 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu10g03112 | 128 | PANTHER | PROTEIN RKD4 | 11 | 81 | IPR044607 | GO:0003700 | |
Vimu10g03112 | 128 | ProSiteProfiles | RWP-RK domain profile. | 9 | 95 | IPR003035 | - | |
Vimu10g03112 | 128 | Pfam | RWP-RK domain | 27 | 75 | IPR003035 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu10g03112 | Vimu-Chr10 | 41866848 | 41867398 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu10g03112 | 17 | 92 | NLP Transcription Factor Family | AT4G38340 | 39.474 | 7.67e-11 | 56.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | RWP-RK | Vimu10g03112 | RWP-RK | 8.4e-17 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu10g03112 | - | - | vun:114163720 | 235.343 |