Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03112 ATTGAGTTAGAGGCCGAGAGTAAAAGGGCTTCTTCAGCTTTTAAACCCAATCGCCAATTTCAGATAAAGAGAATAAAAAAGATGACATTGAATGATCTGAGAGGTGTGTTCCATTTAACGATTAAGGATGCTGCTGCAGAAATAGGCGTATCAGTATCTGTGATAAAGGCAATTTGCCGCAGGGAAAGAATATCTTACTGGCCACAAAGGAAGGTGACAAGCTTGGCGAAGAGAGTGGAAGTACTGAAGAAAAGTTTGGATTCAGCAGATCCAGTGGTAAGGAAAACAAGTCGAGAGGATATTCAAACTTTTCAACGATTAATAATTGAGTGCTGTGGTGGAGTCACCCCAACAGGAATACAACTGCTGCAGTTCCAAGAACAATAG 387 0.4109 IELEAESKRASSAFKPNRQFQIKRIKKMTLNDLRGVFHLTIKDAAAEIGVSVSVIKAICRRERISYWPQRKVTSLAKRVEVLKKSLDSADPVVRKTSREDIQTFQRLIIECCGGVTPTGIQLLQFQEQ 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03112 128 PANTHER PROTEIN RKD4 11 81 IPR044607 GO:0003700
Vimu10g03112 128 ProSiteProfiles RWP-RK domain profile. 9 95 IPR003035 -
Vimu10g03112 128 Pfam RWP-RK domain 27 75 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03112 Vimu-Chr10 41866848 41867398 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03112 17 92 NLP Transcription Factor Family AT4G38340 39.474 7.67e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu10g03112 RWP-RK 8.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03112 - - vun:114163720 235.343