Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03109 ATGGATAACAATTGTAATAACTCCTCTGACTCATATTACAGTCCACTTATCGGTAACTACATCGAACCAGACCCTGCACTTGTCTATATATATGACCAACCCAATGTACTGCCCCAGCAACAAAATGATCCTTTTGTCGTTGAACAGGATCATGTTTCCTTCACTGGTCTAACGATTCAAGATGTATCCACGCATAGCGATAATGATCTCACCATAGGAGGAGTTCCTAATTTGGAAAACGGGGGTTGGTCGGCGAGGAAGCGTAAATTTCACTACATGGATTCAATGATTGAAGATCATCCCGTGCATGGCGATAATACTTTTCCCAACGGAGAAAATATGTGTGCAGACGAACTTCGATTTTGGCCTCCTGGGCCATTTGATATCGATATCGATGCCTCATTTGATCCATTTCTTCATAATTTGATAGATCGGGACATGTCAATTTTCGATCTATCCAATGATGAACTCATTGCACCCTCCTCTCAACAAAACGCATTGCCCCAGCACCAACACGCAGTGCCAGGGCAACAAAATGCATTATGCAAACAGCCAAATGCGCCGCCTCAGAACCAAAATTTGTATCCCTTTGGCCTTGAACAGATTCATGTGCCCATCCTGAATCCAACGTTCCAAGATCAATCCTTGCATGTCAGTTATAATTTTGCAACTGGAGGAGAAGTTCCTAACATTGACATGGAGGGTCCATCAAGGAGGAAGGTTAAACAACCCATTGCTGAACATCCATTATTAAAGCATGGTATACTGAACGAGGAAGATGTGGTAGCACTTGACCATTGGCCCCCGTCATCAAAGTCACTGTCTTGCTCTTGCTGTCAAATTCTTAGACAAATAATTCATACAGATGTTCGAAAAGCTAGAGATTCATGGATCGCTTGGGGTGATTGGCCATGCGATATTCCACGTTCAGGATATGACACCGGGTGTTTCGGCCTCAAAAGCATAGAACAAATAAGAAGTTTCCTAGTAGCATACTGCAAGGACCAGACAAGATTAGGGTTCGTCACTCTGGATGATCCGTTATCTGCATATTATGATACCATCTGCACTGGACTTGATTGGGCTGAACATAATGACGGGGACGATGACTTGAGTCCACATAATGGCACAGAACCCGAGTCTGATTCTGAGCCCGAGCCTGAGACTGCTTCTGAGCCCGGTAATGGGGAGGCTTCAACTGCTAAGCCTAAGCCTAAACGTAATATGGCAGTTCAGAGAAAGAGAGTACCAAAGATGACAATGAATGATTTGAGCCCTTTCTTCCATTTAACTATCAGGGATGCTGCAGATAAATTGGAGGTAAGCGACTCTGTGGTGAAGAAAATCAGTCGCTTGGGAAACTTAAAAAGATGGCCACAAAGAAAGCTGCAAAGCCTTGCGAAGGATGTGAGAGTGTTGAGAAAAGCATTGGATTCGCCCTATGAAGGGACAAGACAGAGAGTTCGACAAGAAATTCAACGACTCCAACGAGAAATGGTAGCGATCTGTGGTGGAGTTACCCCAACCGGAATAGATATGATCCGATTCGAAGAAGAATAG 1560 0.4404 MDNNCNNSSDSYYSPLIGNYIEPDPALVYIYDQPNVLPQQQNDPFVVEQDHVSFTGLTIQDVSTHSDNDLTIGGVPNLENGGWSARKRKFHYMDSMIEDHPVHGDNTFPNGENMCADELRFWPPGPFDIDIDASFDPFLHNLIDRDMSIFDLSNDELIAPSSQQNALPQHQHAVPGQQNALCKQPNAPPQNQNLYPFGLEQIHVPILNPTFQDQSLHVSYNFATGGEVPNIDMEGPSRRKVKQPIAEHPLLKHGILNEEDVVALDHWPPSSKSLSCSCCQILRQIIHTDVRKARDSWIAWGDWPCDIPRSGYDTGCFGLKSIEQIRSFLVAYCKDQTRLGFVTLDDPLSAYYDTICTGLDWAEHNDGDDDLSPHNGTEPESDSEPEPETASEPGNGEASTAKPKPKRNMAVQRKRVPKMTMNDLSPFFHLTIRDAADKLEVSDSVVKKISRLGNLKRWPQRKLQSLAKDVRVLRKALDSPYEGTRQRVRQEIQRLQREMVAICGGVTPTGIDMIRFEEE 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03109 519 PANTHER PROTEIN RKD4 343 505 IPR044607 GO:0003700
Vimu10g03109 519 Pfam RWP-RK domain 418 466 IPR003035 -
Vimu10g03109 519 MobiDBLite consensus disorder prediction 366 416 - -
Vimu10g03109 519 ProSiteProfiles RWP-RK domain profile. 406 487 IPR003035 -
Vimu10g03109 519 MobiDBLite consensus disorder prediction 366 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03109 Vimu-Chr10 41859691 41862005 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03109 339 466 AtRKD Transcription Factor Family AT4G35590 27.778 2.88e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu10g03109 RWP-RK 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03109 - - pvu:PHAVU_009G080800g 752.281