Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03105 ATGAATCTAAGTGAGAGCCTAACTACTCCCAACAACCTTTCTCGCCAATCATCCAAGTCCAAGAGTGGTGGATGCTGTCGAGGCCTCAGCAGCGTTAGGACCGTCTCATCCACCGCACCAACCTTGCAATACCATCACCTTCAGCAGCTTTACCAAAAATTGGAACTAAAGGTCGCAGGTTTGGAAAAAGAGGTGCAGAGGCAGACAGAACTGCGCGTTATGTACAGGAAAAGAATGGAAAAGACGCAGGATTACTTGAAATACTGTCTCCAAATCGCACAGGAAAATGGAATCTTGGACCTCATTACCCACTCCAACGGTGAAGTCTCGCAATCTTCCCTTTCTTCTTCACATGAACCTACAGCTTTGCACAACCATCCCAATCTGATACCCATCGTTGATCAAGCCAAAATCAATGGATGGTTCATCAACCCCAGTGAGATTCGTCTGGGAGAAAAAATAGGGCAGGGAACCACGGCGGAGATTCACAGAGGGACGTGGCGCGGGTTTGATGTGGCGGTGAAGTGCATGTCAGATTCATTCTTCAGCAAAAACGAAAACGGTGTCGTATTCTTCGCTCAGGAGGTTGAAACCCTCTCGAAACAGCGTCACCGGTTTGTGCTTCACCTCATGGGTGCGTGTCTCGACCCTCCGCATCATGCATGGGTGGTTACCGAGTATCTGAACACCACGCTCAAGGAGTGGCTACATGGGCCGGGGAAAAGGCCCAAACACAGAACAACGCCACTCCCTCCCTTCAAAGAGAGGGTGATGCGGGCCCTGGAAATAGCCCAAGCCATGCAGTACCTCCACGAACAAAAGCCCAAGGTCATTCATCGTGACTTGAAGCCCAGCAACATCTTCCTGGACGATGCGTTGCATGTGAGAGTGGCGGATTTTGGTCACGCGCGGTTCTTGGACGATGACGAGATGGCCCTCACCGGAGAAACAGGAACATACGTGTATATGGCACCGGAGGTAATCCGGTGCGAGCCCTACGATGAAAAATGTGATGTATATAGTTTTGGGATCATACTCAACGAGTTACTTACTGGAAACTACCCTTATATTGAGACACAACTTGGTCCCGCCAAGATTGCTATGGAAGTTGTGGAGAATGAGCTAAGGCCTTTGGTTGCATCAAATGACGATGGTGAGGAAGTGGAAGAATTGATTGAGCTAATATGCCTTTGCTGGAATGCAAGCCCATCCACTCGACCATCATTCGCAACAATTACTCATACCCTCAACTCTTATGTCAAAAGGGTCCTTCTAATTTCAAATTAA 1287 0.4872 MNLSESLTTPNNLSRQSSKSKSGGCCRGLSSVRTVSSTAPTLQYHHLQQLYQKLELKVAGLEKEVQRQTELRVMYRKRMEKTQDYLKYCLQIAQENGILDLITHSNGEVSQSSLSSSHEPTALHNHPNLIPIVDQAKINGWFINPSEIRLGEKIGQGTTAEIHRGTWRGFDVAVKCMSDSFFSKNENGVVFFAQEVETLSKQRHRFVLHLMGACLDPPHHAWVVTEYLNTTLKEWLHGPGKRPKHRTTPLPPFKERVMRALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDALHVRVADFGHARFLDDDEMALTGETGTYVYMAPEVIRCEPYDEKCDVYSFGIILNELLTGNYPYIETQLGPAKIAMEVVENELRPLVASNDDGEEVEELIELICLCWNASPSTRPSFATITHTLNSYVKRVLLISN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03105 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vimu10g03105 428 Gene3D Transferase(Phosphotransferase) domain 1 229 424 - -
Vimu10g03105 428 Gene3D Phosphorylase Kinase; domain 1 136 228 - -
Vimu10g03105 428 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 416 - -
Vimu10g03105 428 CDD STKc_MAP3K-like 154 416 - -
Vimu10g03105 428 Coils Coil 44 71 - -
Vimu10g03105 428 ProSiteProfiles Protein kinase domain profile. 148 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03105 428 SUPERFAMILY Protein kinase-like (PK-like) 116 415 IPR011009 -
Vimu10g03105 428 SMART serkin_6 148 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03105 428 Pfam Protein kinase domain 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03105 428 ProSitePatterns Protein kinases ATP-binding region signature. 154 175 IPR017441 GO:0005524
Vimu10g03105 428 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03105 Vimu-Chr10 41841047 41842801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03105 129 423 MAP Kinase Kinase Kinase AT4G35780 35.880 3.58e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vimu10g03105 Pkinase 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03105 - - vum:124826171 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03105 10 41841047 41842801 Vimu10g03105 10 41841047 41842801 ECH