Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03104 ATGGATGCTAATTTTAAGAAGCAAGGTCTTCAAGGCGGCGAGGTGAGCTTGGCTGAGAAGAAAAGGGAAGTTATGGTGGCGATTCCAAATGAGGGTGGTGGTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGGGAATTCGCCCCACAGAATGTTAAACGACAACGAGTTTGCTGTAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAGATTCCCGTTTCCAGCGCCAATCTCATCCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTACCCTGTTGATGGGACTCTTTTGGAAGAGAATGGTAACTCAACTTTGCAAGAAAATTTGGGTGTTGGTTCACCATATAAAGCATCGCCTATTAACAATAAACCTGGAACTATTAATAGAACAGTCTCCATCCTTTCTGTGATCACTCCCAAGACGCCGTTGATGGCGTCTCCCGGGCCGGCTGGTGGGGAGGATTTCGATGAACTCATTTACAGAAAAGTTGAATTGAGTAAAAGCAAACGTAGTAGAAGAGTAACAGTTAAGGTTTTGTCTGAATGGTTTGTGTTAGTGTGCATTGCAAGTACTTTGGTAGCTAGTTTAACAGTTGGAAAACTTAAAAGAACGGAGATTTGGGGTTTGGGGATTTGGAGATGGTGTGTGCTTGTGATGGTTACCTTTTGTGGAATGTTGGTTACCAGATGGTTCATGCGCATTATTGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAAGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGGGGAGTGGACCGATCTGAATTGGCCACAAAGATTTTGAATGGGGTAACATGGACTCTTGCTTCCCTCCTCATTGGAGCATTCCTGTGGTTCATGAAGACATTGTTGCTCAAGATTTTGGCGTCAAATTTTCATGTTAAATCTTTCTTTGATCGAATTCAAGAAACGCTTTTCCACCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGAAATCAGTCAGCGTTGGTCACTTTAGTTTCAGGAGTACAGATGGTAAGGGTGGAATAAAGAAAGAGACCATTGATATTGCGAAGCTTCACCAGATGAAACAAGAGAAGGTTTCTGCATGGACTATGAAGGTCTTGGTAGATGCAATGACAAATTCAAGGCTTTACACAATCTCTAGTGCACTAGATGAAAGTTTTGATGATGGAGAAAATGAACAGACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATCACATTTTCAGGAATGTTGCTCCCCCCGGTTGCACGTAA 1443 0.4345 MDANFKKQGLQGGEVSLAEKKREVMVAIPNEGGGESLMPKQQSRGNSPHRMLNDNEFAVKSPPLNCASPEIRFMPSPNKPPKIPVSSANLIRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGNSTLQENLGVGSPYKASPINNKPGTINRTVSILSVITPKTPLMASPGPAGGEDFDELIYRKVELSKSKRSRRVTVKVLSEWFVLVCIASTLVASLTVGKLKRTEIWGLGIWRWCVLVMVTFCGMLVTRWFMRIIVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVDRSELATKILNGVTWTLASLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQETLFHQYILQTLSGPPLVEEAEKVGKSVSVGHFSFRSTDGKGGIKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTNSRLYTISSALDESFDDGENEQTDKEITNEMEATAAAYHIFRNVAPPGCT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03104 480 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 83 478 IPR016688 -
Vimu10g03104 480 MobiDBLite consensus disorder prediction 29 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03104 Vimu-Chr10 41837043 41838485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03104 60 477 Mechanosensitive Ion Channel Family AT5G12080 55.344 4.22e-147 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03104 K22048 - gmx:100803107 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03104 10 41837043 41838485 Vimu10g03104 10 41837043 41838485 ECH