Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03103 ATGTTGCTATTGGTTGAAGAAATGAACATATTGACAACAGTCTTTTTGAAGCTTAACAATGAAAAAGTGTACTATCCAAATTCTGTCTTGGCTATGAAACCGATTAGCAACTATTACAGAAGTCCAGATATGGGTGACCGTGTAGAGTTCTCCATTGATTTTACAACACCAGCTGAGAAAATTGGGGCACTGAAAGAAAGAGTAAAAAGGTACCTGGAGAGAAACCCACAGTACTGGCACCCTAATCATGGCTTAGTAGTGAAGGACATTGAAGACGTAAACAAGATTAAGATGGGTATATACGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGAGAAGAACTGAATTGGTGATGGAAATAAAGAAGATATTTGAAGAACTCAACATCAGATACAACCTTCTTCCACAAGCCATTCATCTCAGACATATGGAGCCAGACCCTAGGGTTACATGA 468 0.3868 MLLLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDRVEFSIDFTTPAEKIGALKERVKRYLERNPQYWHPNHGLVVKDIEDVNKIKMGIYVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQAIHLRHMEPDPRVT 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03103 155 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 150 IPR016688 -
Vimu10g03103 155 Pfam Mechanosensitive ion channel 5 135 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03103 Vimu-Chr10 41832936 41836318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03103 3 145 Mechanosensitive Ion Channel Family AT5G12080 65.734 2.84e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03103 K22048 - gmx:100777617 278.485