Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03088 ATGGCTACTTGTCTCTTCAGATTTCCTCTCACCTCGCAACCCAAGCTCTGCTTCAATTACACGCCCAACCATGCTGTCCAATTCATAGCTCCGACCAAACGACGTCGCAACCGCAACCACCACCGCCATGAAATTCTCCGTCCATCATTCGCTGTATCTAGCTCCTTCCGGACCGAGATTGGATCGCCGGAATCAGTTCTTATTGGAGGCCAGAGAGAGAAAAATGACTCGCCCGTTCTGCTTGACGTCACCGGCATGATGTGCGGTGCGTGCGTCTCCCGAGTCAAAAACATCCTGTCCGCTGACGATCGAGTTGACTCGGTCGTTGTCAACATGCTGACCGAGACCGCCGCCGTTAATCTGCGCCGGATCGAGGAGGAACCGGCGAGCGTCGCGGAGAGCCTCGCACGGAGACTGAGCGACTGCGGATTTCCGACGAAGCGGAGAGCGTCGAGTTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAATTGGTCGCCAAGAGTCGAAGTCGCGTCGCGTTAGCTTGGACATTGGTCGCATTGTGCTGCGGGTCGCACGCTTCGCATATCTTTCACTCTTTGGGGATCCACATTGCTCATGGTAGATCGCTTTTGGAGATTCTTCATAGTTCGTACGTGAAGGGTGGTTTAGCTTTAGGGGCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAATGCGTTTAAGAAGGGGTCGCCTAACATGAACTCTCTTGTGGGATTTGGTTCTATAGCCGCATTCATCATTAGTTCCGTGAGATTCTATCTGGAATTTGAGCGTTCGATCCCGCTACTTAATCCCGGCCTAGCATGGGATGCATCTTTCTTTGATGAACCGGTCATGCTTCTTGGATTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATACAGGCATCTAGCGATATGAATGAACTACTTTCACTTATATCTACTCAGTCAAGACTTGTGATTACTTCAACAGAAGGTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGATTCTGTGTTGGTGCTGCCTGGAGAAACTATTCCTATAGATGGAAAGGTTATTTCAGGAAGAAGTGTTGTGGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGCCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGTTCCAACACTGTGATATCGAAGATTGTACGCATGGTTGAGGAGGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTCTGTCAGCAGCAACATTTGCTTTTTGGTATTTTGTTGGATCACAGATATTTCCTGATGTGTTGCTCAATGATATGGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGTTTAAAACTATCTGTAGATGTTTTGGACGTACTTGACAAAATCTTGCGTGTTGTTTATGAGTCTTCAGATAGTTGTGTATCAGGAATTCATTGCAACATTGTGGATAAAGAGGAAGAAAAAAGTAGGGTTGTTTCTTGTCCTTGTGCATTGGGTCTTGCTACGCCCACAGCAATCCTGGTTGGCACCTCACTTGGTAAGATGCTTTTGCTTTCTGCATTTAGTAAACTTAGACAACTGCTAGGAGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTAGAATAAACTATATTGCTCTAGACAAGACAGGAACCCTGACGAAAGGAAAACCAGTTGTGTCGGCCATAGGCTCTATCCATTATGGAGAGTCTGAAATTCTTCGGATTGCTGCTGCAGTGGAGAAGACTGCATCTCACCCAATAGCAAAGGCTATTATCAGTAAAGCTGAGTCATTGGAGTTGATCCTTCCTGTCACAAAGAGACAGTTAGTAGAACCAGGTTTCGGTACATTAGCAGAAGTAGATGGGCATTTGATTGCAGTTGGATCTTTGGAATGGGTTCATGAACGCTTCCAAACAAAAGTAAATCCGTCCGATTTGACAAATCTGGAACATATTTTGATGAATCATTCATCAAATACAGCTTCTTCTAAGCACTCGAAAACTGTTGTCTACGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATAGCTGACACTGTACGTGAAGATGCTGAATCTACTGTGATGAGGCTGAAGCAGAAGGGGATTAAAACGGTACTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACAGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTAGGTTTATTTCCTCTCTAAAAGCTGCCGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCTTCTTTAGCTGTGGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATTATACTTCTAGGGAACAAAATTTCACAAGTTGTCGATGCGCTCGATCTAGCACAGGCAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCAGTCGCCTATAATGTTGTTGCCATTCCCATTGCTGCCGGTGTATTACTTCCCCAATTTGATTTCGCTATGACACCGTCACTTTCGGGTGAGCAGCATTCTAGCACTCCATTCTTCTCATACATTTCCTCCGGCTATTCAAGAAGTTATAATTAA 2811 0.4578 MATCLFRFPLTSQPKLCFNYTPNHAVQFIAPTKRRRNRNHHRHEILRPSFAVSSSFRTEIGSPESVLIGGQREKNDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVNLRRIEEEPASVAESLARRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVAKSRSRVALAWTLVALCCGSHASHIFHSLGIHIAHGRSLLEILHSSYVKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSVRFYLEFERSIPLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTVISKIVRMVEEAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSQIFPDVLLNDMAGPEGDPLLLSLKLSVDVLDVLDKILRVVYESSDSCVSGIHCNIVDKEEEKSRVVSCPCALGLATPTAILVGTSLGKMLLLSAFSKLRQLLGARKGLLIRGGDVLERLARINYIALDKTGTLTKGKPVVSAIGSIHYGESEILRIAAAVEKTASHPIAKAIISKAESLELILPVTKRQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTKVNPSDLTNLEHILMNHSSNTASSKHSKTVVYVGREGEGIIGAIAIADTVREDAESTVMRLKQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSRFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPQFDFAMTPSLSGEQHSSTPFFSYISSGYSRSYN 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03088 936 Gene3D - 599 872 IPR023214 -
Vimu10g03088 936 NCBIfam HAD-IC family P-type ATPase 590 913 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g03088 936 NCBIfam HAD-IC family P-type ATPase 343 488 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g03088 936 Pfam E1-E2 ATPase 344 487 - -
Vimu10g03088 936 FunFam Copper-transporting ATPase PAA2 chloroplastic 76 149 - -
Vimu10g03088 936 FunFam Copper-transporting ATPase 1, putative 314 445 - -
Vimu10g03088 936 Pfam haloacid dehalogenase-like hydrolase 604 835 - -
Vimu10g03088 936 FunFam Copper-transporting ATPase PAA2, chloroplastic 619 752 - -
Vimu10g03088 936 CDD P-type_ATPase_HM 179 903 - -
Vimu10g03088 936 SUPERFAMILY Calcium ATPase, transduction domain A 351 441 IPR008250 -
Vimu10g03088 936 SFLD p-type atpase 591 874 IPR044492 -
Vimu10g03088 936 Pfam Heavy-metal-associated domain 81 144 IPR006121 GO:0046872
Vimu10g03088 936 CDD HMA 81 145 IPR006121 GO:0046872
Vimu10g03088 936 PANTHER ATP7, ISOFORM B 547 915 - -
Vimu10g03088 936 Gene3D - 314 445 - -
Vimu10g03088 936 PRINTS P-type cation-transporting ATPase superfamily signature 821 840 - -
Vimu10g03088 936 PRINTS P-type cation-transporting ATPase superfamily signature 391 405 - -
Vimu10g03088 936 PRINTS P-type cation-transporting ATPase superfamily signature 766 776 - -
Vimu10g03088 936 PRINTS P-type cation-transporting ATPase superfamily signature 608 622 - -
Vimu10g03088 936 PRINTS P-type cation-transporting ATPase superfamily signature 744 755 - -
Vimu10g03088 936 ProSiteProfiles Heavy-metal-associated domain profile. 77 147 IPR006121 GO:0046872
Vimu10g03088 936 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 610 699 IPR023299 GO:0000166
Vimu10g03088 936 ProSitePatterns E1-E2 ATPases phosphorylation site. 610 616 IPR018303 -
Vimu10g03088 936 Gene3D - 619 752 IPR023299 GO:0000166
Vimu10g03088 936 Gene3D - 71 150 - -
Vimu10g03088 936 SUPERFAMILY HMA, heavy metal-associated domain 79 144 IPR036163 GO:0046872
Vimu10g03088 936 NCBIfam heavy metal translocating P-type ATPase 252 904 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu10g03088 936 SFLD Haloacid Dehalogenase 591 874 - -
Vimu10g03088 936 SUPERFAMILY HAD-like 606 905 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03088 Vimu-Chr10 41727030 41734645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03088 243 915 Primary Pumps ATPases AT1G63440 33.235 1.09e-96 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03088 K17686 - gmx:100127402 1418.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03088 10 41727030 41734645 Vimu10g03088 10 41727030 41734645 ECH