Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03085 ATGGCGTTTTGGTTTGGATTCCTTCTTCTGGTTCTTCTCCTTCCTTTGGATTTGGTGAAATCTCACGACGGAGCAACGTTGTTGGAGATGAAAAAGTCGTTGAGGGATGTGGATAACGTTCTGTTTGACTGGAATGACACACCTTCTTCAGATTATTGTGTCTGGAGAGGGGTTACTTGTGAAAATGTCACTTTCAATGTGGTTGCACTGAATCTTTCAGGATTGAATCTTGAAGGCGAGATTTCACCTGCATTAGGGAGGCTTAGCAGCTTGGTCTCCATTGATCTCAAGGAAAACCGTTTATCTGGGCAGATACCTGATGAGCTTGGTGACTGTTCCTCTTTGAAAAACGTAGATTTCTCTTTTAATGAGATTCGGGGAGATATACCGTTTTCAATTTCGAAGATGAAACAACTGGAAAATCTAATCTTGAAAAATAATCAGCTCATTGGACCAATTCCTTCTACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTCAGCGGTGAGATACCAAGACTTATATACTGGAATGAAGTTTTGCAATATCTTGGCTTGCGAGGTAACAATTTGTCGGGTTCACTTTCTTCAGACATATGCCAGTTAACTGGATTGTGGTATTTTGACGTGAGAAACAATAGCTTGACAGGCAATATTCCTGAAAACATAGGCAATTGTACTGCTTTCCAGATCTTGGATTTATCTTACAACAAGCTATCTGGAGAGATACCATTCAATATTGGTTTCCTACAAGTAGCAACTCTGTCATTGCAAGGCAATAAACTCTCAGGTTATATTCCATCAGTTATCGGTCTGATGCAAGCCCTTACTGTTTTAGATTTGAGCTGTAACATGCTAAGCGGGCCAATCCCTCCTATATTGGGAAATTTAACCTACACAGAAAAACTGTATTTATATGGAAACAAGCTGACCGGTCGCATCCCCCCGGAGCTCGGAAACATGACGAAGCTTCACTATTTGGAATTGAATGATAACCTTTTAAGTGGACAAATCCCGCCTGAGCTTGGAAAGCTCACTGATCTGTTTGACTTAAATGTTGCCAATAACAACCTTGAGGGTCCAATTCCCGAGAATCTCGGCTCATGTAAAAACCTCAACAGCCTAAATGTGCATGGGAATAAGATGAGTGGAACAATTCCCTCAGCTTTTCAAAGCTTGGAGAGTATGACCTATCTGAATCTTTCTTCAAACAATTTTCAAGGGTCTATTCCAATTGAACTTTCACGGATCGGAAATTTGGATACACTGGATATATCAAATAATAATATAGTTGGTTCCATTCCTTCTTCCATTGGTGATTTGGAACATCTTCTGAAATTGAATCTGAGCAGAAATCATTTAACAGGCTTTATTCCGGCAGAGTTTGGTAATCTAAGAAGTGTCATGGATATTGACCTTTCAAATAATAAACTCTCTGGCTTGATCCCTGAAGAACTTAGTCAGCTTCAGAACATGATATCTTTGAGACTAGAAATGAACAAATTATCTGGGGATGTGTCTTCGCTTGTAAATTGCCTTAGTCTTTCTTTGATTAATGTATCTTACAACAATTTAGTTGGTGTTATTCCCACAAGCAACAATTTTTCCAGGTTTTCTCCTGATAGTTTCATTGGAAACCCTGGTCTCTGTGGCTATAGGCTGGATTCATCTTGTCAAGGGTCTCATCCTACCGAGCGAGTTAACTTGTCTAAGGCAGCTATCCTAGGAATTGCTCTAGGTGCCCTTTTGATTCTTTGCATGGTACTCTTTGCAGCTTGCCGACCACACAATCCAGCTCCTTTCCCTGAAGGATCTTTTGACAAACCAGTTAATTACTCACCTCCGAAGCTAGTGATACTTCACATGAATATGGCACTTCATGTATATGATGATATAATGAGAATGACTGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCTTCAAGTACAGTTTACAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTCTATTCCCACTACCCCCAATGTTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTTGTCAGTCTCCAAGGCTACTCTCTGTCTCCATTTGGAAACCTCCTCTTTTATGATTACATGGAAAATGGAAGTCTGTGGGATCTTTTACATGGACCTGCCAAGAAGAAAAAACTTGATTGGGATGTCCGTCTAAAAATAGCACTTGGATCAGCACAAGGGCTCGCTTATCTACACCATGATTGCTGTCCACGTATCATTCACAGGGATGTGAAATCCTCCAATATATTACTAGACAAAGACTTGGAGCCCCATCTCACCGATTTTGGCATTGCAAAGAGTCTATGCCCTTCTAAGTCCCACACTTCCACTTACATAATGGGCACCATTGGCTACATAGACCCCGAGTATGCTAGAACTTCTCGTCTCACTGAGAAGTCTGATGTGTATAGCTACGGTATTGTATTACTTGAGCTTCTAACTGGGAGGAAAGCTGTGGAAAACGAATCAAACCTTCATCATCTGATTTTGTCCAAGACAGCTAATGATGCTGTAATGGAAACCGTTGACCCAGATATCAGTGCCACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTGTGCACCAAGAAGCAACCAGTGGATAGACCCACAATGCACGAGGTGACCCGCGTTCTGGGGAGTCTAGTGCCACCAAAAGAATCAGTCCCAACGCAAGTACTTTTACCTAATTCACAGCCATCTGCAAAAATGCAATCCTACAAGGATGAATACGCCAATCTTAAAGCTCCACACTTGGTCAACTGTCCCTCCATCAGCACCTCTGATGCGCAACTCTTCCTCAAATTTGGAGAAGTAATATCTCAAAACAGCGAGTGA 2934 0.4127 MAFWFGFLLLVLLLPLDLVKSHDGATLLEMKKSLRDVDNVLFDWNDTPSSDYCVWRGVTCENVTFNVVALNLSGLNLEGEISPALGRLSSLVSIDLKENRLSGQIPDELGDCSSLKNVDFSFNEIRGDIPFSISKMKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLSGSLSSDICQLTGLWYFDVRNNSLTGNIPENIGNCTAFQILDLSYNKLSGEIPFNIGFLQVATLSLQGNKLSGYIPSVIGLMQALTVLDLSCNMLSGPIPPILGNLTYTEKLYLYGNKLTGRIPPELGNMTKLHYLELNDNLLSGQIPPELGKLTDLFDLNVANNNLEGPIPENLGSCKNLNSLNVHGNKMSGTIPSAFQSLESMTYLNLSSNNFQGSIPIELSRIGNLDTLDISNNNIVGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNKLSGLIPEELSQLQNMISLRLEMNKLSGDVSSLVNCLSLSLINVSYNNLVGVIPTSNNFSRFSPDSFIGNPGLCGYRLDSSCQGSHPTERVNLSKAAILGIALGALLILCMVLFAACRPHNPAPFPEGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPFGNLLFYDYMENGSLWDLLHGPAKKKKLDWDVRLKIALGSAQGLAYLHHDCCPRIIHRDVKSSNILLDKDLEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVENESNLHHLILSKTANDAVMETVDPDISATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPPKESVPTQVLLPNSQPSAKMQSYKDEYANLKAPHLVNCPSISTSDAQLFLKFGEVISQNSE 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03085 977 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 185 294 - -
Vimu10g03085 977 Gene3D Ribonuclease Inhibitor 184 258 IPR032675 -
Vimu10g03085 977 Pfam Leucine rich repeat 357 412 IPR001611 GO:0005515
Vimu10g03085 977 Pfam Leucine rich repeat 425 484 IPR001611 GO:0005515
Vimu10g03085 977 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 295 567 - -
Vimu10g03085 977 SMART LRR_typ_2 208 232 IPR003591 -
Vimu10g03085 977 SMART LRR_typ_2 471 494 IPR003591 -
Vimu10g03085 977 SMART LRR_typ_2 327 351 IPR003591 -
Vimu10g03085 977 SMART LRR_typ_2 160 184 IPR003591 -
Vimu10g03085 977 SMART LRR_typ_2 279 303 IPR003591 -
Vimu10g03085 977 SMART LRR_typ_2 399 423 IPR003591 -
Vimu10g03085 977 SMART LRR_typ_2 88 112 IPR003591 -
Vimu10g03085 977 SMART LRR_typ_2 447 470 IPR003591 -
Vimu10g03085 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 159 912 - -
Vimu10g03085 977 Pfam Protein kinase domain 648 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03085 977 SUPERFAMILY L domain-like 48 298 - -
Vimu10g03085 977 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 616 720 - -
Vimu10g03085 977 SUPERFAMILY L domain-like 257 567 - -
Vimu10g03085 977 Gene3D Phosphorylase Kinase; domain 1 618 720 - -
Vimu10g03085 977 SUPERFAMILY Protein kinase-like (PK-like) 622 911 IPR011009 -
Vimu10g03085 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Vimu10g03085 977 SMART serkin_6 645 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03085 977 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 20 184 - -
Vimu10g03085 977 ProSiteProfiles Protein kinase domain profile. 645 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03085 977 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Vimu10g03085 977 Gene3D Ribonuclease Inhibitor 259 572 IPR032675 -
Vimu10g03085 977 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Vimu10g03085 977 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 721 921 - -
Vimu10g03085 977 Gene3D Transferase(Phosphotransferase) domain 1 721 923 - -
Vimu10g03085 977 ProSiteProfiles Leucine-rich repeat profile. 162 184 IPR001611 GO:0005515
Vimu10g03085 977 ProSitePatterns Protein kinases ATP-binding region signature. 651 674 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03085 Vimu-Chr10 41710220 41717823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03085 90 976 Receptor kinase-like Gene Family AT5G07180 64.414 0.0 1140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vimu10g03085 Pkinase 6.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03085 K20718 - gmx:100804875 1725.29