Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03084 ATGCCTGAGCCAATCATGAATATGCGCCATGGCACTAAGGTTTGGGTTCACGACAGGGATTTAGCGTGGATTCCAGCTGAAGTAGTCGAATCTTCAGCAAAGAATGTTACCGTTGCCACTGCTTCTGGCCTTAAGGTTGTTGCTCTTTCCGAGAACGTGTTTCCCAGGGATGCGGACGAAGATGAGCATGGAGGAGTGGAAGATATGACGAGGTTGGCTTACTTGAATGAGCCAGGGGTGTTGTACAATCTCCGCAGAAGATATGCGCTGAATGATATCTATACTTATACAGGGAGCATTTTAATAGCTGTTAATCCATTCACAAAGCTTCCTCATCTGTATGATATTCATATGATGGAGCAGTATAAGGGAACTCCATTTGGTGAGCTTAGTCCACATGTATATGCTGTTGCTGATGCTTCTTATAGAGCTATGATGAATGGAGGTCAAAGCCAATCTATCTTGGTTAGTGGTGAAAGTGGTGCAGGGAAAACAGAGACTACAAAATTGATTATGCAATATCTTACCTTTGTTGGTGGGCGTGCTGCTGGTGATGACAGAACTGTTGAACAACAAGTTCTTGAATCGAATCCACTCTTAGAGGCATTTGGCAATGCAAGGACTGTCAGGAATGACAATTCAAGCCGTTTTGGGAAGTTTGTTGAAATTCAATTTGATTCAAATGGTAGAATATCTGGTGCTGCAATTAGAACTTACTTGCTAGAAAGATCACGAGTAGTACAGATAACAGATCCAGAACGAAATTATCACTGCTTTTATCAGTTGTGTGCATCTGAAAGGGATGTAGAGAAGTATAAGTTGGGACATCCCAGTCACTTCCACTATTTGAATCAAAGTAAAGTCTACGAATTAGATGGCATAAATAGTGCTGAAGAGTACATGAAGACGAGGAGAGCAATGGATATTGTTGGCATAAGTCATGAGGATCAGGAAGCCATATTTTGCACCTTGGCTGCAATTTTACATTTGGGAAACATTGAATTTTCTCCTGGTAAAGAGCATGACTCATCGGTACTAAAAGATGATAAATCAAGATTTCATTTACAGATGGCTGCCGATCTTTTCAGGTGTGATTTGAATCTACTGCTTGCAACATTATGTACGCGTTCAATACAAACCCGAGAAGGAAATATTGTCAAAGCTCTTGATTGTAATGCTGCTGTTGCTGGCCGGGATGCTTTGGCAAAAACTGTCTATGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATAGTTCTGTGGGCCAAGATATCAATTCCCAGATGCAAATTGGAGTTTTGGATATTTATGGTTTTGAGTGTTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAACTTTGCAAATGAAAAGCTTCAGCAACATTTTAATCAGATCATTGCTTGTGGAAGAAGTTCACTCATCATTATCATTGTGGAAGGTGTCGTGGTGGTGGTATTCAGAGGAGTGCATGTGGCTGCTGTAGCTCATGTTTTCAAGATGGAGCAGGAGGAATACACCAAAGAAGAAATTAACTGGAGCTACATTGAATTTATAGACAACCAAGATGTTTTAGATTTGATTGAAAAGGTTTTAGCTCAGTCATTTCTTTTGATGGAGAAACCCATTGGGATCATTGCTCTGTTAGATGAAGCTTGCATGTTTCCAAAATCAACGCATGAAACATTCTCTACCAAGTTGTTTAAACACTTCCTGTCACACCCTCGGTTAGAAAAGGAGAAGTTTTCAGAAACAGATTTTACCCTTTCTCATTATGCTGGAAAGGTCACTTACCATACAGAGACATTCTTAGACAAAAATCGTGATTATGTAGTTGTAGAACATTGTAATCTATTATCCTCTTCAAAGTTGCCATTTGTGTCGGCTCTTTTTCCTTTGTTAACAGAGGAATCTTCAAGGTCATCATACAAGTTTTCTTCTGTGGCTTCCAGATTTAAGCAACAACTGCAAGCACTCATGGAAACACTTAACACAACAGAACCTCATTACATTCGTTGTGTCAAGCCAAGTTCTTTGAATCGACCACAAAAGTTTGAGAATACTAGTGTCATACACCAATTACGTTGTGGGGGTGTCCTTGAGGCTGTTAGAATAAGTCTGGCAGGTTACCCCACTCGTAGGATTTACTCAGAGTTTGTAGACCGCTATGGATTAATAGCTCCCGAATTTATGGATGGAAGTTATGATGATAAAGCTGTAACTCTGAAAATATTGCAAAAGCTAAAGCTTGAGAATATTCAGTTAGGTAGGACCAAGGTGTTTCTGAGGGCCGGTCAAATTTGCATTTTAGACTCTAGGCGTGCAGAAGTTTTGGACAATGCTGCAAAATGTATTCAGCGTCAGTTGCGGATGTTTATAGCTCGCAGGGATTTCATCTCAATTCGTGCTGCTACACTTTCTCTTCAAGCGTGCTGCAGGGGTTGCATTAGCCGAAAGATATATGCTTCTAAGCGGGAGACAGCAGCAGCTATTTCCATTCAAAAATACACCCGTATGTGTCTGATGAGACATGCTTATGTGAAATTGTGTTATTCTGCTATTATTGTACAATCCAATGTTCGTGGTTTCACAACTCGACAAAGGTTCTTGCATAGAAAGGAGCACAAAGCTGTTACTTACATTCAGGCCTATTGGAGGATGTGCAAGGTTCGATCTGCATTCCTAAAACATCAAAATTCAATTGTAGCAATGCAATGCCTTTGGCGATGCAGACAAGCAAAAAGAGAGCTTCGAAGACTTAAGCAAGAGGCTAATGAAGCTGGAGCCTTGCGTTTAGCTAAGAATAAACTTGAGAAACAATTGGAAGAGCTTACATGGCGTTTGCATCTAGAGAAAAAAATTAGGATTTCTAATGAAGAGGTTAAGCATGTTGAGATTTCCAAATTACAGAAGATGGTGGAGGCTCTGAATGTTGAATTAGATGTAGCTAAACTTGCAACAATTAATGAGTGCAACAGAAATGCAGTTTTGCAAAATCAGTTGCAATTATCAGTAAAGGAAAAATCTTCTTTAGAAAGAGAGCTAGTTGCAATGGATGAAGTGCAAAAGGAAAATGCTCAATTAAAGGGTTCATTGGAGGCTTTTGAAAAGAAGAGCATGGCTTTGGAGCTTGAGCTTGTTGGTGCTCGGAAAGACCATGAAAAAACCATTCTGAAAATGAGGGAGTTTGAACACAAGTGTTCTCAACTTGGGCAAGATGTGAAAAGCCTCCAGGAAAAGCTATTTAGTTTAGAGGATGAAAATCACGTGCTTCGTCAGAAAGCCTTAACTGTATCTCCTAAGAGTAACTATCGAGGTTTAACGAAGTCATTTTCAGAAAAACAACCAAATGCAGTAGCTCCCCACACTGATCAAAAGCCTATATTTGAATCACCCACACCTACAAAACTTATTTCCTCTTTTACACATGGAAGTTTCTCAGACTCTCGTAGATCAAAATTAACGGCAGAGAAGCACCAGGATAACAATGAACTCCTTTCTAGGTGTATTAAAGAGGATTTGGGGTTCAAAAATGGTAAACCTCTGGCAGCTTGTATCATATACAAATGTCTTCATCATTGGCATGCCTTTGAATCTGAGCGCACTGCCATATTTGATTACATTGTTGATGGAATTAATGATGTCCTAAAGGTTAGAGACGATGACATTATCTTGCCATATTGGCTGTCTAATACGTCTGCACTTCTATGCCTCTTGCAAAGGAACTTGCATTCAAATGGCTTTTTAACAGCCACTGCTCAACGTTATGCCAGATCATCTGGCTTGACCAGCCGAATTGGGCATAAGCTGAGGTCTCCATTGAAGCTTATTGGATATGATGATAGTACAGTACATGTGGAAGCAAGATATCCAGCTATTCTTTTTAAACAACAGCTAACTGCTTGTGTAGAGAAGATTTTTGGCCTTATACGTGATAATTTGAAAAAGGAGCTTTCTCCACTTCTGGCATCATGTATTCAGGTGGTCCTAGCTGATACTTTTGGGGATTCAAACAATGCACCTAAAACAGGTCGGATGCTAGGTGGAAAATCATCAAAGTCTCCTGGTGGGCATCCTCCACAATCACCTGTTGCTCAATGGGACAATATCATCAAATTTTTGGATTCACTCATGAGCAGAATGCGTGTAAATCATGTACCATCCTTTTTCATCCGCAAGCTGGTTACTCAGGTTTTTTCCTTCATCAACATTACACTCTTCAATAGCCTTCTGTTGCGACGTGAATGTTGCACTTTCTCAAATGGTGAATATGTAAAGTCTGGGCTTGCAGAACTGGAGAAATGGATAGTTAATGCAAAGGAGGAGTATGCAGGAACATCCTGGCACGAACTGAACTATATAAGGCAAGCTGTTGGGTTTCTGGTAATACATCAGAAGAGAAAAAAATCTTTGGAAGAAATTCGGCAGGATCTTTGTCCGGCATTAACAGTGAGGCAAATTTATCGGATCTGTACTATGTACTGGGACGACAAATATGCAACCCAAAGTGTGTCCAACGAGGCAAGTTGTGTAGTTAATGAAATGAGGGAAATTGTGAGCAGGGACAATCAGAGTTTGACAACTAATTCTTTCTTGTTGGACGATGATATGAGCATTCCTTTTTCTGCTGAAGACATAGATATGGCAATCCCTGCTATAAATACTGATGATATCGATCCCCCAGCATTTTTGTGCGAATATCCCTGTGCCCAGTTTCTTACTTTACATGAGAAATAA 4737 0.3998 MPEPIMNMRHGTKVWVHDRDLAWIPAEVVESSAKNVTVATASGLKVVALSENVFPRDADEDEHGGVEDMTRLAYLNEPGVLYNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYDIHMMEQYKGTPFGELSPHVYAVADASYRAMMNGGQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDVEKYKLGHPSHFHYLNQSKVYELDGINSAEEYMKTRRAMDIVGISHEDQEAIFCTLAAILHLGNIEFSPGKEHDSSVLKDDKSRFHLQMAADLFRCDLNLLLATLCTRSIQTREGNIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINSSVGQDINSQMQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNQIIACGRSSLIIIIVEGVVVVVFRGVHVAAVAHVFKMEQEEYTKEEINWSYIEFIDNQDVLDLIEKVLAQSFLLMEKPIGIIALLDEACMFPKSTHETFSTKLFKHFLSHPRLEKEKFSETDFTLSHYAGKVTYHTETFLDKNRDYVVVEHCNLLSSSKLPFVSALFPLLTEESSRSSYKFSSVASRFKQQLQALMETLNTTEPHYIRCVKPSSLNRPQKFENTSVIHQLRCGGVLEAVRISLAGYPTRRIYSEFVDRYGLIAPEFMDGSYDDKAVTLKILQKLKLENIQLGRTKVFLRAGQICILDSRRAEVLDNAAKCIQRQLRMFIARRDFISIRAATLSLQACCRGCISRKIYASKRETAAAISIQKYTRMCLMRHAYVKLCYSAIIVQSNVRGFTTRQRFLHRKEHKAVTYIQAYWRMCKVRSAFLKHQNSIVAMQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQLEELTWRLHLEKKIRISNEEVKHVEISKLQKMVEALNVELDVAKLATINECNRNAVLQNQLQLSVKEKSSLERELVAMDEVQKENAQLKGSLEAFEKKSMALELELVGARKDHEKTILKMREFEHKCSQLGQDVKSLQEKLFSLEDENHVLRQKALTVSPKSNYRGLTKSFSEKQPNAVAPHTDQKPIFESPTPTKLISSFTHGSFSDSRRSKLTAEKHQDNNELLSRCIKEDLGFKNGKPLAACIIYKCLHHWHAFESERTAIFDYIVDGINDVLKVRDDDIILPYWLSNTSALLCLLQRNLHSNGFLTATAQRYARSSGLTSRIGHKLRSPLKLIGYDDSTVHVEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLASCIQVVLADTFGDSNNAPKTGRMLGGKSSKSPGGHPPQSPVAQWDNIIKFLDSLMSRMRVNHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNAKEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRICTMYWDDKYATQSVSNEASCVVNEMREIVSRDNQSLTTNSFLLDDDMSIPFSAEDIDMAIPAINTDDIDPPAFLCEYPCAQFLTLHEK 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03084 1578 ProSiteProfiles Myosin motor domain profile. 64 775 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 ProSiteProfiles IQ motif profile. 897 926 IPR000048 GO:0005515
Vimu10g03084 1578 SMART iq_5 896 918 IPR000048 GO:0005515
Vimu10g03084 1578 SMART iq_5 825 847 IPR000048 GO:0005515
Vimu10g03084 1578 SMART iq_5 777 799 IPR000048 GO:0005515
Vimu10g03084 1578 SMART iq_5 800 822 IPR000048 GO:0005515
Vimu10g03084 1578 SMART iq_5 848 870 IPR000048 GO:0005515
Vimu10g03084 1578 SMART iq_5 873 895 IPR000048 GO:0005515
Vimu10g03084 1578 Coils Coil 966 986 - -
Vimu10g03084 1578 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Vimu10g03084 1578 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 Pfam IQ calmodulin-binding motif 875 894 IPR000048 GO:0005515
Vimu10g03084 1578 Pfam IQ calmodulin-binding motif 780 798 IPR000048 GO:0005515
Vimu10g03084 1578 Pfam IQ calmodulin-binding motif 827 846 IPR000048 GO:0005515
Vimu10g03084 1578 Pfam IQ calmodulin-binding motif 852 869 IPR000048 GO:0005515
Vimu10g03084 1578 Gene3D Myosin VI head, motor domain, U50 subdomain 313 440 - -
Vimu10g03084 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 924 IPR027417 -
Vimu10g03084 1578 MobiDBLite consensus disorder prediction 1111 1136 - -
Vimu10g03084 1578 MobiDBLite consensus disorder prediction 1341 1364 - -
Vimu10g03084 1578 ProSiteProfiles Dilute domain profile. 1206 1517 IPR002710 -
Vimu10g03084 1578 Gene3D Kinesin motor domain 635 709 IPR036961 -
Vimu10g03084 1578 Gene3D Kinesin motor domain 13 297 IPR036961 -
Vimu10g03084 1578 Coils Coil 1060 1094 - -
Vimu10g03084 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 468 IPR027417 -
Vimu10g03084 1578 SMART MYSc_2a 58 776 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 FunFam Myosin heavy chain 254 308 - -
Vimu10g03084 1578 Coils Coil 994 1014 - -
Vimu10g03084 1578 ProSiteProfiles IQ motif profile. 874 903 IPR000048 GO:0005515
Vimu10g03084 1578 Gene3D - 441 634 - -
Vimu10g03084 1578 Coils Coil 1018 1052 - -
Vimu10g03084 1578 CDD MyosinXI_CBD 1157 1544 IPR037975 GO:0007015
Vimu10g03084 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 825 IPR027417 -
Vimu10g03084 1578 ProSiteProfiles IQ motif profile. 851 877 IPR000048 GO:0005515
Vimu10g03084 1578 PANTHER MYOSIN 56 467 - -
Vimu10g03084 1578 Gene3D - 710 776 - -
Vimu10g03084 1578 Pfam Myosin head (motor domain) 66 467 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 Pfam Myosin head (motor domain) 496 763 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 CDD MYSc_Myo11 78 763 IPR036018 -
Vimu10g03084 1578 ProSiteProfiles IQ motif profile. 778 807 IPR000048 GO:0005515
Vimu10g03084 1578 Gene3D - 875 925 - -
Vimu10g03084 1578 Gene3D - 777 827 - -
Vimu10g03084 1578 Gene3D - 828 874 - -
Vimu10g03084 1578 Pfam DIL domain 1394 1497 IPR002710 -
Vimu10g03084 1578 Coils Coil 903 954 - -
Vimu10g03084 1578 SMART DIL_2 1393 1500 IPR002710 -
Vimu10g03084 1578 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu10g03084 1578 PRINTS Myosin heavy chain signature 514 542 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03084 Vimu-Chr10 41685380 41708354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03084 6 1573 Myosins gene family AT4G33200 69.216 0.0 2189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03084 K10357 - gmx:100796413 2740.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03084 10 41685380 41708354 Vimu10g03084 10 41685380 41708354 ECH
Vimu1g02800 1 40299803 40306945 Vimu10g03084 10 41685380 41708354 PCT
Vimu10g03084 10 41685380 41708354 Vimu1g02797 1 40274609 40277934 PCT