Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03079 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTGTTGATCTTAAACTGTTACAAGACTCAAAGTTCCTTACAGGAATCAGAGAAACAGGTTTTGAAACAAGGTTCTTTCCAAAGGTTATGCCTATCGGATATAAGCATTCCTAGCTCCCCTCAAGCCATTGAAGATCTTTCCATTTCCCTTGTTGGCCCAAAGCTTTACACATTCACCCTAGAGGAGCTAAGGGAAGCAACACATAATTTCTCATGGAGCAATCTTCTGGGTGAAGGAGGGTTCGGACCCGTGTACAAAGGTTTTGTTGATGACAAACTTAGACCTGGTTTGAAGGCTCAGTCTGTAGCAGTGAAACAACTGAACTTGGATGGCTTCCAAGGTCACAGGGAGTGGCTGGCGGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATTGGCTACTGTTGTGAGGAGGAGCACAGGCTTCTTGTGTATGAATACATGGCTAGAGGCAGCTTGGAGAATCAACTATTCAGAAGATACTCTGCTGCCTTGCCATGGTCAACAAGGATGAAGATTGTATTGGGTGCAGCTAAGGGTCTGGCCTTCCTTCACGAAGCAGATAAACCTGTAATATACAGAGATTTCAAAACTTCAAATATCTTACTTGACTCGGTATGTTCAATATCTTTTCTGAAGGATGCTAAGATATCTTCTAATGGCCTACATCATCTTCCTGATTACACGGCTAAATTATCAGATCTTGGGCTAGCAAAAGATGGTCCTGAAGGGGAAGACACACATGTAACGACAACATGCATAATGGGAACCCGAGGCTATGCTGCCCCTGAGTACATCATGTCAGGTCACCTTTCCTCCAAGAGTGATGTGTATAGCTATGGAGTGGTTTTGTTGGAATTGCTTACAGGAAGAAGGGTAGTGGATAAGTGCCGACCCAATAGAGAACGAACCCTTGTGGAATGGGCAAGGCCTCTTTTGAGAGATCAAAGAAAGTTGCACCATATAATAGACCCTAGATTAGAAGGGCAGTTTCCTACGAAAGGAGCTTTGAAGGTTGCTGCATTGACCTATAAATGTTTGAGCCACCACCCCTATCCAAGGCCAACTATGAGTGATGTGGTTAAGATACTAGAGTCTCTTCAGGATTTTGACGATGTGATCATAGGACCATTTGTGTATGTTGCAGTGAGTGAAAGTAGCCAATGA 1215 0.4313 MSSKKITWKSIVLILNCYKTQSSLQESEKQVLKQGSFQRLCLSDISIPSSPQAIEDLSISLVGPKLYTFTLEELREATHNFSWSNLLGEGGFGPVYKGFVDDKLRPGLKAQSVAVKQLNLDGFQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKIVLGAAKGLAFLHEADKPVIYRDFKTSNILLDSVCSISFLKDAKISSNGLHHLPDYTAKLSDLGLAKDGPEGEDTHVTTTCIMGTRGYAAPEYIMSGHLSSKSDVYSYGVVLLELLTGRRVVDKCRPNRERTLVEWARPLLRDQRKLHHIIDPRLEGQFPTKGALKVAALTYKCLSHHPYPRPTMSDVVKILESLQDFDDVIIGPFVYVAVSESSQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03079 404 ProSiteProfiles Protein kinase domain profile. 81 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03079 404 SUPERFAMILY Protein kinase-like (PK-like) 57 382 IPR011009 -
Vimu10g03079 404 PANTHER OS01G0588500 PROTEIN-RELATED 34 384 - -
Vimu10g03079 404 Pfam Protein tyrosine and serine/threonine kinase 84 380 IPR001245 GO:0004672|GO:0006468
Vimu10g03079 404 Gene3D Phosphorylase Kinase; domain 1 46 163 - -
Vimu10g03079 404 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Vimu10g03079 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vimu10g03079 404 Gene3D Transferase(Phosphotransferase) domain 1 164 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03079 Vimu-Chr10 41660353 41662316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03079 68 380 Glycoside Hydrolase AT3G07070 48.418 4.99e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu10g03079 PK_Tyr_Ser-Thr 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03079 - - gmx:100805771 692.96