Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03073 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCGTTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGTTTCGTCCTCTGTGCAAGTGCCATCATCAACTTCTCCTTTTGCCGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACACAGAAATTAGGTGGCCTGTATAGCCCTAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGATATCCTTTTCTGGCATAAATTATACGATTTCTCCTACATTAACCAAGTGTCGTACCTTATCAATTTCTCTTCTTTATTTAAATTTACTTGTACTGAGTTCAGAAAGATTTTATTACAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAGCAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATAGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAATGTGCTCATGGAAGATTTTAGGCCGCTTTCTGAGTATACAAATGCTGATAATCACTGTCTTCCGGCGAGAATCCACCAAGTGAAGAAAGCTAATAATGTTGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAAATTCGGACTCAACTTTGTCTGGTTGCTGCATCTATGTTGATCCAGGCATTTCATCCGAGTTGAGGAACAAGGTTATTGAGTCTGCTTCAAGAGAAGGTGCTAATTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATACCTCGGATACTGTAATAACCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATACTTGAAGACGTTAATAGTGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGCCACTGACTATCCTCTGGACAGTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAACTCTGCAAAAATTGGAGTCAGAAATCGCCGTGGCCGCCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCTGACTCAACTTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCACGCTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCGAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTCAAAAACCATTTCCTTACCATACTCTTCCCAATTGACCGTTTTTCCGAGATGGGTCCTTCATCGAGAACGTTTTTCAGCCATAACGGCTTTACATGTCTTCAGGTGTTGGATCATATACATGCATTTTATCAGGAGAACATGTCAAGGCAGGAAATTGAAGTTGCAATTCATAGTGATTCAAGACATGCTGATAGGCTTCGATCAGTGTACTCAAGTAAGGAAACAATAGCACGTGGCCACGTAATGTTCAAAAGGGTTGAGTTCTTGGGTAGTCGAACAAGTTTTGAAATGTTAAAGCGTGTAAGTGGGGAAAACAACTCCAATGTTTATGAGCTATTACTTAGGGCCTAA 1737 0.4139 MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPVSSSVQVPSSTSPFAGLVICVTGLSKEARNQVMEATQKLGGLYSPNLHPQCTHLVVQISFSGINYTISPTLTKCRTLSISLLYLNLLVLSSERFYYSFGGRKFEHALKHGAKNGLFIVTLGWFVDSVRKNVRLSESHYRVKSYGDNNVLMEDFRPLSEYTNADNHCLPARIHQVKKANNVEELQRFSVRESIRNSDSTLSGCCIYVDPGISSELRNKVIESASREGANLVEQWFVGCNVSHVVTEGTSIQRYLGYCNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLILEDVNSGISGKEVIKQKATDYPLDSESEVGYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEMGPSSRTFFSHNGFTCLQVLDHIHAFYQENMSRQEIEVAIHSDSRHADRLRSVYSSKETIARGHVMFKRVEFLGSRTSFEMLKRVSGENNSNVYELLLRA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03073 578 Pfam Family of unknown function (DUF6699) 485 562 IPR046522 -
Vimu10g03073 578 Pfam BRCA1 C Terminus (BRCT) domain 48 163 IPR001357 -
Vimu10g03073 578 SUPERFAMILY BRCT domain 46 178 IPR036420 -
Vimu10g03073 578 CDD BRCT_TopBP1_rpt2_like 50 167 - -
Vimu10g03073 578 Gene3D BRCT domain 49 178 IPR036420 -
Vimu10g03073 578 ProSiteProfiles BRCT domain profile. 46 177 IPR001357 -
Vimu10g03073 578 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 578 - -
Vimu10g03073 578 SMART BRCT_7 48 167 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03073 43 177 Core DNA Replication Machinery Family AT1G77320 27.407 3.45e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03073 - - gmx:100815253 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03073 10 41603613 41608514 Vimu10g03073 10 41603613 41608514 ECH