Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03072 ATGAATTTCAACCATGATTCATCAGACCATAACCAAAATCAAAGTAAAAAACGAAAGCAACCCGATGTTGATAATTATACATCCCTGGAATTGTCTACTTCCAACATGAACCCCAGAAGTTATCAGATAGAAGTGTTTGAAGTTGCACGGAGAAGGAACACAATAGCCGTGTTGGATACAGGCTCTGGTAAGACCTTGATTGCGGTGATGATTATGAAAGAGGTTGGTCAAACCATCAAGTCTTTGGGAATGAAGAAGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTAGTCAATCAGGCATCTTACATCCTAACTCTCTTTCTGCTTCTGCTTATCTTTCACAAATGTGTTAAGCAATTCAATAATATAAGATATCTGACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGCAGGAGATTAGTAACAATGATGTATTGGTTATGACACCTCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCGTGCGTTTGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAGCAACTGGCAATCATCCCTATACAAAAATAATGAAGGAATTTTATCACCAAGCAAAGGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCGGTTGGTAAAAGAGGTGTTTCCTCCACTACGGATTGTGAGGATCAAATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGGCAGAGATGAGTAGATATATATTGTCTGCTAAAGAGAGTTGTAGATTTCATGACCAAGCACGATTTTCTGCCTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTCCAAGCGAAAGATACTGACTGAATTTAACCTGTTTGGACAGTTTGATGCATTGTTATCAGAAAATAAAAGCAACTATATGGATGTGGAGAATAAATTTAAGACACTGTCTCAGCGGATGTCCAATGAACTTGGAAAAATTTTACATTGCCTTGAAGATCTTGGAATCCTATGTGCTTATGAGTGTATAACTTTTGTTGAAGAAGTAATGAAATTAATTGAAGAATCCCTCCATTCTGATGATAAAAACATTTTGGGGGTTGATTTTGATTATTCAAAGGCAGAAGATATGGGACACATATCTCCAAAGTTACTTGAACTTATTAAAATCTTCCAATCACTTGGAGAATCGAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCAAATTTCTCATTTTTCAGTTTCCTATTTAACTGGAAACAGTACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGGAAATATTGGAATCTTTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATAAGATTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGCAAATCTTCTCAATTAGCTTCTTCTGGCAGCTTGCCCTATCAATACCCCAATACCCGAGGGATTTATGTACCCAAATTATTCTTGAGAGGACGTGTGGGCCCTTTGATCCAGCTGTTAAGATGGGTACCAGTCTTCACCTTGGGGGAAACCTGAAGCAAAGAAATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATACATAAGGACCATGAATCTAATTTAAGGGTATTTACAGTGGGGAAAACAGATACATACTATGTGGATTCTACTGGAGCTTCTGTGACTTTAGATTCTAGTGTAAATCTTATCCACCGATACTGTGGAACACTTCCCCAAGATCAGTACTCCTCTGCAAAGCCCACTTATGAGGTTCTGCCAGTGGAAGGGGGTTACCAATGTAAATTAACATTGCCATCTAATTCAGTCCTCCAGACAATAATTGGTCCATTAGGAAAAGATATTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTCATCGAAGATCTTTCAGAAGATGACCATATCGTGAAAAATAAAGAATCTAGTTCAGGGGCAGAGACCTTGCAAGATTGTGCCAAAGTGAAATTGGTGGGATCATTGTGGAAGATTGTGGAAATGGTGGAATTGCCATGTGTCCATCTTGTTTTACATTATGGGGTTTTGGGTTCTCCATCGCACAACTCTTTTGGGTTAAAACCCAAGGGAATCTACAGAATCTTTGTTTGTGTTAAAATGCATTTTGATTTGCTTTTGGCATTTGAAGGAACCACAAAGAGAAAGGAGTTACATGGAACAGCCAACATTTGTGCACTAAGTGGTGCATGGGGAGACAAACTTGATGCTGAAGCCAGATTTTTTGCCTACAAACTAGAATTCACATGTAGTATTGTTAGCGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATCAGATCTTTATTTAGTCTCAAAGGTCGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGATTGGTGTTTAGGTCAAAATCAGCAGGAGGAGAAACAGAATTTTTACTACAAAAAGACACAAAATCATTATGGAGAGCAAAACACTTATATTTGCTTCTACCACTTGAGAAATTGAATGGTATTTGTGAGGGAGCCTTGCAAATTAATTGGCATGGAATTGATTCTTGTGCATCTGCTATTGAATTCTTAAGGAGAAGATATTCTTTGGTCACTGGAGATTGTGATAATAACGGAATAGTCAAATCACCTCAGGATACCAGTTCAATGGAGATGGAATATGTTGGAAAAAAAAAGATTCACTTTGCTAATTGTGTGCTTGATGCTGACAATATAAAAAACACGTTGGTTTTGGCGATTCATACTGGAAAAATATATTGTATCATTGACATTGACAGTAACCTGTTTCCTGAAAGTTCTTTCTGTTCCAAGGAACACGATACCTACTCAGATTATTTCAGTAAAAGGTATGGGATTACCCTGAGACATCCGAGACAGGCTCTTTTATTATTAAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTTCAAGAGGAAGATGCACGAGACAAATCATCACAAATTGGCTCTACAACCTCCAAAGTGCCTGCACATGTTCACCTCCCACCTGAGCTTTTATATGTTCTTGAATTTAAAAGAAACGTGTTGAGGTCATTGTACTTGTTGCCATCTCTAATGTACCGTATTGAATCATTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTCCAACATAAATAGCTCACTGATTCTAGAGGCGCTTACAACTTTGAGATGCAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAGTATGTGGTCAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACATGAAGGACAATTATCTGCCAAACGGTCTCTAGCAGTTTGTAATTCAACCCTTCATAAATTGGCAATAGAACGTAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGACGTTGGGTTGCTCCGGGACAGCGTTCTATACACCCTGTTTGTTGTGATTGTGGATTGGAAACCCTTGAAGTACCTTTAGATGTTAAATTCCACACTGAGGATCCCAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTTCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTTGGGGGTGGACTATTTGCATCACTTAATGTGATGAAATGGCTTGGAATTGGAGCAGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCATACTTGCATGCCAAAAGAAAGTGAGATTTCAATCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAAGAACTTGGGATTGGTTGCTGTTACGAGAGGCTTGAATTTCTTGGTGACTCAGTGTTGGACCTGCTTATCACATGGCATTTATATAAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTGCGATCTGCCTCTGTCAATAATGACAACTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGCCATTTCTGAATCGGATCCTAGATCACTTCCAAGCATTAGAGCTCCGAAGGCACTTGGAGATCTAGTGGAAAGTATTGTTGGCGCAATGCTAATTGATTCCAAGCTCAGTCTAGACCGAGTGTGGGAGGTTTTCTGTCCTCTCTTATCCCCCATAGTTACACCTGAAAAACTTGAATTGCCCCCGTTTCGTGAATTAAATGAATTGTGTGATTCTCTTGGGTACTGTGTAAAAGTAAATGAAAACTGTGAAAAAAAGGGATCCATGATGCAAGTTGAGGTTAGCGTACAGTTGCCAAATGATTTGTTGGTTCGTGAAGGAAAGGGGGCAAATAAGAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTGAAGGACCTTGAGAAGCGGGGAATTTCATATTGTAATTTCATGTCCAAGGGAAAAAGGGATAATTCTGTCCATATCATTGATTCACCTCATCTCAAAATGGATTCTAGTGCTTGTTTTACTCTTAACGAAGAACATTCCTCAGAGTTACATAAAAGGAACAGATTTGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAAATACTCTTCTGGTGACGACTCTGGTTTTAGTGCTTCAATTCCAGTTAAGTTATCAATTAAAACGAAAAAGGGAGGACCACGGACCACACTATTTGAGGTGTGTAAGAAACTACAGTGGCCAGTACCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGCTCTGCAAGGAAGCAAGGGACTGAACTGTTTTGTTTCGAAAGTTACCTTGTGCATACCCAAATATGGAAATATAGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAAAGCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAATTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAA 5364 0.3894 MNFNHDSSDHNQNQSKKRKQPDVDNYTSLELSTSNMNPRSYQIEVFEVARRRNTIAVLDTGSGKTLIAVMIMKEVGQTIKSLGMKKLIVFLAPTVHLVNQASYILTLFLLLLIFHKCVKQFNNIRYLTDFQVEEYYGAKGVDTWTLKTWEQEISNNDVLVMTPQILLDALRKAFVRLEMICLIVIDECHRATGNHPYTKIMKEFYHQAKEKPKIFGMTASPVGKRGVSSTTDCEDQISELESILDSQRYTVEDRAEMSRYILSAKESCRFHDQARFSALSLKPKIEALWSKRKILTEFNLFGQFDALLSENKSNYMDVENKFKTLSQRMSNELGKILHCLEDLGILCAYECITFVEEVMKLIEESLHSDDKNILGVDFDYSKAEDMGHISPKLLELIKIFQSLGESSQVLCLIFVDRIITAKVIERFAKKVPQISHFSVSYLTGNSTSVDAVAPKRQKEILESFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERQIFSISFFWQLALSIPQYPRDLCTQIILERTCGPFDPAVKMGTSLHLGGNLKQRNQLFDIIRSERSMTDASIHKDHESNLRVFTVGKTDTYYVDSTGASVTLDSSVNLIHRYCGTLPQDQYSSAKPTYEVLPVEGGYQCKLTLPSNSVLQTIIGPLGKDIRLARHLACFEACKKLHQMGALNEHLVPFIEDLSEDDHIVKNKESSSGAETLQDCAKVKLVGSLWKIVEMVELPCVHLVLHYGVLGSPSHNSFGLKPKGIYRIFVCVKMHFDLLLAFEGTTKRKELHGTANICALSGAWGDKLDAEARFFAYKLEFTCSIVSEIYSGFVLLIESKLDDDVGNIESDLYLVSKVVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGGETEFLLQKDTKSLWRAKHLYLLLPLEKLNGICEGALQINWHGIDSCASAIEFLRRRYSLVTGDCDNNGIVKSPQDTSSMEMEYVGKKKIHFANCVLDADNIKNTLVLAIHTGKIYCIIDIDSNLFPESSFCSKEHDTYSDYFSKRYGITLRHPRQALLLLKQSHNPHNLLFNFQEEDARDKSSQIGSTTSKVPAHVHLPPELLYVLEFKRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTSKSNINSSLILEALTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSAKRSLAVCNSTLHKLAIERKLQGYIRDSAFEPRRWVAPGQRSIHPVCCDCGLETLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTISDCVEALIGAYYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLHTCMPKESEISILEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYKSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLSQISEYVKAISESDPRSLPSIRAPKALGDLVESIVGAMLIDSKLSLDRVWEVFCPLLSPIVTPEKLELPPFRELNELCDSLGYCVKVNENCEKKGSMMQVEVSVQLPNDLLVREGKGANKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNSVHIIDSPHLKMDSSACFTLNEEHSSELHKRNRFDGTNPTESILPLKYSSGDDSGFSASIPVKLSIKTKKGGPRTTLFEVCKKLQWPVPAFDSTEYKDRSLFESCEALQGSKGLNCFVSKVTLCIPKYGNIECQGEARSDKKSSFDSAAVKMLLELQKLGKVEIDPPLSS 1787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03072 1787 SUPERFAMILY RNase III domain-like 1363 1527 IPR036389 GO:0004525|GO:0006396
Vimu10g03072 1787 Gene3D Ribonuclease III domain 1152 1334 IPR036389 GO:0004525|GO:0006396
Vimu10g03072 1787 CDD RIBOc 1380 1528 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 Gene3D - 381 527 IPR027417 -
Vimu10g03072 1787 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g03072 1787 FunFam Endoribonuclease dicer-like 1 622 718 - -
Vimu10g03072 1787 CDD RIBOc 1170 1334 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 Pfam Helicase conserved C-terminal domain 398 509 IPR001650 -
Vimu10g03072 1787 ProSitePatterns Ribonuclease III family signature. 1400 1408 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 239 IPR014001 -
Vimu10g03072 1787 Gene3D - 1696 1776 - -
Vimu10g03072 1787 CDD SF2_C_dicer 390 520 - -
Vimu10g03072 1787 SMART riboneu5 1170 1343 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 SMART riboneu5 1379 1530 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 FunFam Endoribonuclease dicer-like 1 1358 1528 - -
Vimu10g03072 1787 Pfam PAZ domain 1016 1147 IPR003100 GO:0005515
Vimu10g03072 1787 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 565 IPR001650 -
Vimu10g03072 1787 SUPERFAMILY PAZ domain 1017 1126 IPR036085 GO:0005515
Vimu10g03072 1787 Gene3D - 32 297 IPR027417 -
Vimu10g03072 1787 Pfam Dicer dimerisation domain 627 711 - -
Vimu10g03072 1787 SUPERFAMILY RNase III domain-like 1162 1341 IPR036389 GO:0004525|GO:0006396
Vimu10g03072 1787 CDD DEXHc_dicer 36 253 - -
Vimu10g03072 1787 Gene3D Dicer dimerisation domain 622 719 IPR038248 -
Vimu10g03072 1787 Gene3D paz domain 1005 1124 - -
Vimu10g03072 1787 Pfam Ribonuclease III domain 1400 1506 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 Pfam Ribonuclease III domain 1188 1322 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 SMART ultradead3 34 252 IPR014001 -
Vimu10g03072 1787 FunFam Endoribonuclease dicer-like protein 33 291 - -
Vimu10g03072 1787 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 627 717 IPR005034 GO:0016891
Vimu10g03072 1787 SMART helicmild6 425 512 IPR001650 -
Vimu10g03072 1787 MobiDBLite consensus disorder prediction 10 24 - -
Vimu10g03072 1787 FunFam Dicer-like 104 1146 1335 - -
Vimu10g03072 1787 PANTHER DICER-RELATED 52 1610 - -
Vimu10g03072 1787 ProSiteProfiles Ribonuclease III family domain profile. 1151 1323 IPR000999 GO:0004525|GO:0006396
Vimu10g03072 1787 Pfam Type III restriction enzyme, res subunit 36 221 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vimu10g03072 1787 Gene3D Ribonuclease III domain 1361 1530 IPR036389 GO:0004525|GO:0006396
Vimu10g03072 1787 ProSiteProfiles PAZ domain profile. 1017 1126 IPR003100 GO:0005515
Vimu10g03072 1787 SMART PAZ_2_a_3 992 1150 IPR003100 GO:0005515
Vimu10g03072 1787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 515 IPR027417 -
Vimu10g03072 1787 ProSiteProfiles Ribonuclease III family domain profile. 1364 1507 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03072 Vimu-Chr10 41602587 41632484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03072 410 509 Eukaryotic Initiation Factors Gene Family AT3G19760 33.981 1.35e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03072 K11592 - vvi:100254311 1817.74