Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03070 ATGGCGGATGTCATGATAATGAAGGAGATCGAGGACACAGCACTGCGTTTGGGCGTGGATCTCTCCACTCTTGATCTCGATTCCATTCGTCTTCCTCCCGGTGAAACTTGCGGAATTGTCAGTGATGACGAGGAAGTTTACCAGGAAGATAATCTCGAGTTCGAGTCCGGATTTGGTAACATCGTTGTCGTCGACAACCTTCCTGTTGTTCCGAGGGAGAAGTTTGAAAAGCTCGAAGGAGTGGTTCGTAAAATTTATAGTCAGATTGGTGTTCTCAAAGAGGATGGCATCTGGATGCCGGTTGATCCTGAAACTGATAAAACCCTAGGGTATTGCTTCGTCGAGTACAATACTCCCCAGGTATATTCGCTCTTTCTTCAATGTACCTAA 390 0.4615 MADVMIMKEIEDTALRLGVDLSTLDLDSIRLPPGETCGIVSDDEEVYQEDNLEFESGFGNIVVVDNLPVVPREKFEKLEGVVRKIYSQIGVLKEDGIWMPVDPETDKTLGYCFVEYNTPQVYSLFLQCT 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03070 129 CDD RRM_eIF3B 59 120 IPR034363 -
Vimu10g03070 129 SUPERFAMILY RNA-binding domain, RBD 49 121 IPR035979 GO:0003676
Vimu10g03070 129 Gene3D - 59 123 IPR012677 -
Vimu10g03070 129 FunFam Eukaryotic translation initiation factor 3 subunit B 55 125 - -
Vimu10g03070 129 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 32 121 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03070 Vimu-Chr10 41592316 41592808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03070 9 120 Eukaryotic Initiation Factors Gene Family AT5G27640 67.857 7.37e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03070 K03253 - gmx:100817394 233.417