Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03065 ATGGACACGGACATGGAGAAGCATGCGATGTCTGGTGGTGGAGATTGTAAGAGTGGCGAAAAGTTATACAAAGGTGTGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGGCTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGCCCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTCCTTGCAACATGGACACCAATGTGCCTTTGCTTGTGCCTGCTCTCCAATCTCTTACTCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTGATGCTGATGTTCATGCTGCTGCTGCTGGGAATTCTTCATCATTTCGAGGGAATTTGTGTAAATCTGACGGCACAGTAGAGAGTAGTTCTAGTACCTGCACGCCCATGACCACTACCTCCTCATGTTCTACTACTATGCATGAATGTGATGGATTGGTGCAGGTGGATCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGATTACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTCTGAGCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAAGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 789 0.4626 MDTDMEKHAMSGGGDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLLVPALQSLTPHEIQEVAAKFANEDPLLLKPLAQESHADADADVHAAAAGNSSSFRGNLCKSDGTVESSSSTCTPMTTTSSCSTTMHECDGLVQVDHGDMDWTFLKEFDYSNEVFPVGSDYDLYSELHKMHSTSGELLYSTPPPPPFEGYQELTEAEEDPFSHQSFLWNWNF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03065 262 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vimu10g03065 262 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Vimu10g03065 262 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vimu10g03065 262 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Vimu10g03065 262 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Vimu10g03065 262 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vimu10g03065 262 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vimu10g03065 262 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Vimu10g03065 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 166 - -
Vimu10g03065 262 FunFam Ethylene-responsive transcription factor 2 21 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03065 Vimu-Chr10 41565800 41568510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03065 23 113 AP2-EREBP Transcription Factor Family AT1G74930 73.626 2.36e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g03065 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03065 - - vra:106760431 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03065 10 41565800 41568510 Vimu10g03065 10 41565800 41568510 ECH