Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03060 ATGGTCTGCGAGATGGAGAATGATTGCATAGAGGACATGGACATTGAGGCCCTTCCTTCAATGTGGCCTGAAGATATTGGTACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACTATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGACTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGTTGGCATACCTAATGAAACACTGGGAGTACAAACAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTTAGCAAGCAAAGGCAGGATGTTGAACTCAGGAAATTGGAGATATTGGAAGAACATCGATTTGTGGAAGAAAGATATGGGGGTGATAAACGCCCAGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCATGATGTACCTTGCAGGAAAAGTGATGCTGTGGTTCAAAACAAGAAGAACGAGATTGATGCTGAGTATGGCACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAGGCAAGTATCCAAAGGGAACAGATACTTGAAGAGAAGTTGCAAGAAAGTATAGCAAACATTGAGAGGCAGTCCTCACCGGTGGAAGAACTGTCCCAGATCCTAAAAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCACCAGGACAAAGATTTGCGCTATTGTTTTATATACAATCATTTCCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGATCAAAAACATTTTTGATATATGTAGAACCCGTGTTTAGCAAAGCTGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTCCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACAATGCGAGCAAAACAAATGCTGGCAACAATGTCGCACGAGATAAGGTCTCCTTTGTCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTTGACTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTTGAGTCAGGTTGCACTGATATTTTAAAATTTGATCATTCTCCAAAATCCCTGCTCTATGTAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTACTCCAGACTGCTGCAGTTTCGTTGCAAAAAGTACTAACCTTGGAAGGACATGTAACTGATGATGTACCTGTTGAGGTCGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCGTGAAGTTCACCCATGAAGGCAAAATTGGAATAAACCTTTACGTCGTGCCAGAACCTTCTTTTGCAAAGGCAGAATGCATACAAAAGATGACTTCAGAGCATTCAACTATTTCAGCGCCTCAAAGTGGCAGCGACAGAAAACCTCTTGGTGATGATTGTCCCAGCCAAAACCATGCATTCAATGACGAATGTAGATCACCGGTTAAAAGCGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACGGGCATTGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCATTCTCGAAAGTACGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTCTAACCGTGTCTAGCAAAGAACATTATGGTTCTACCTTCACTTTCATACTTCCATACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTATTCTCATCTAATGGATGTAGCAGGACACAGATGTTATTACCAAACAAAATTGGATATAGAAGCTCCCATAAACTTGGTGGATTTTCTGACAGTTTATATTCAATCCTCTCTAATGATATCATGTCAAAAGAGACATGCTCAGTTGATGATTCATCTTCAGTTGTTGATGGTCCAGAGATGTCTGAATCGGCCAGTTCATCTGGTCACAGCTCAGAAACAAAGAACAGAAGTTCAGTTAGCAGAGATAAACTCCAGCAAGATAAGGCTCATACCTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCAAGTGGAGAAATGGCTGCAGCAACAAAGTCATGTGAATCCCAACAAACATGTCAGGGTCACGGGAAGACAAACACAACTGTCCAATCAAGCAACGGTACACCAGGAGTAACCAAATCCTCATCATGGCCTAAGATCCTTCTTGTTGAAGATACCAAGATTAATATCATGGTGACACAGACCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGCGGAAGCTGTACGTGCAGTTCAGCGCTGCACTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTGAAGCAACAAAACTGATTCGATCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCAGGAATCGAGCAAAGTCTTCCAGATTCAGATTATGAATGTTCTGAACCTTCTAAAAAGCGGATTCCCATTGTTGCTATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTATGCAAATGGAATGGATTCGTTTGTATCAAAACCTGTAACTCTCCAGAAACTGAAAGAGTGTATTGAACAGTACCTGAGGTGA 3057 0.4161 MVCEMENDCIEDMDIEALPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFVEERYGGDKRPVSILDDVYDGIWHDVPCRKSDAVVQNKKNEIDAEYGTVMYWKQRALQLEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGCTDILKFDHSPKSLLYVGVMKLEATKFRPREVVKHVLQTAAVSLQKVLTLEGHVTDDVPVEVVGDVLRMRQILTNLISNAVKFTHEGKIGINLYVVPEPSFAKAECIQKMTSEHSTISAPQSGSDRKPLGDDCPSQNHAFNDECRSPVKSECSMNGDTEEQPYSAGTTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHSRKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGCSRTQMLLPNKIGYRSSHKLGGFSDSLYSILSNDIMSKETCSVDDSSSVVDGPEMSESASSSGHSSETKNRSSVSRDKLQQDKAHTWSLNGYADSSEATVASGEMAAATKSCESQQTCQGHGKTNTTVQSSNGTPGVTKSSSWPKILLVEDTKINIMVTQTMMKQLGHSIDVVNNGAEAVRAVQRCTYDLILMDVCMPVMNGLEATKLIRSFEETGNWDAARNAGIEQSLPDSDYECSEPSKKRIPIVAMTANALSESAEECYANGMDSFVSKPVTLQKLKECIEQYLR 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03060 1018 SMART REC_2 873 1013 IPR001789 GO:0000160
Vimu10g03060 1018 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Vimu10g03060 1018 Gene3D - 360 438 - -
Vimu10g03060 1018 Coils Coil 92 119 - -
Vimu10g03060 1018 FunFam Putative histidine kinase 5 360 437 - -
Vimu10g03060 1018 ProSiteProfiles Histidine kinase domain profile. 379 683 IPR005467 -
Vimu10g03060 1018 CDD HATPase_EvgS-ArcB-TorS-like 506 680 - -
Vimu10g03060 1018 PRINTS Bacterial sensor protein C-terminal signature 667 680 IPR004358 GO:0016310|GO:0016772
Vimu10g03060 1018 PRINTS Bacterial sensor protein C-terminal signature 643 661 IPR004358 GO:0016310|GO:0016772
Vimu10g03060 1018 PRINTS Bacterial sensor protein C-terminal signature 608 622 IPR004358 GO:0016310|GO:0016772
Vimu10g03060 1018 Pfam Response regulator receiver domain 875 942 IPR001789 GO:0000160
Vimu10g03060 1018 MobiDBLite consensus disorder prediction 843 870 - -
Vimu10g03060 1018 Gene3D - 867 1018 - -
Vimu10g03060 1018 CDD REC_hyHK_CKI1_RcsC-like 875 1013 - -
Vimu10g03060 1018 FunFam Histidine kinase 5 214 349 - -
Vimu10g03060 1018 Coils Coil 178 209 - -
Vimu10g03060 1018 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Vimu10g03060 1018 SMART HKATPase_4 501 683 IPR003594 -
Vimu10g03060 1018 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1017 - -
Vimu10g03060 1018 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Vimu10g03060 1018 ProSiteProfiles Response regulatory domain profile. 874 1017 IPR001789 GO:0000160
Vimu10g03060 1018 SUPERFAMILY CheY-like 873 1018 IPR011006 -
Vimu10g03060 1018 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 452 681 IPR036890 -
Vimu10g03060 1018 Gene3D - 454 686 IPR036890 -
Vimu10g03060 1018 Gene3D PAS domain 213 349 - -
Vimu10g03060 1018 FunFam Histidine kinase 5 867 1018 - -
Vimu10g03060 1018 MobiDBLite consensus disorder prediction 772 809 - -
Vimu10g03060 1018 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Vimu10g03060 1018 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Vimu10g03060 1018 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 681 IPR003594 -
Vimu10g03060 1018 MobiDBLite consensus disorder prediction 772 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03060 Vimu-Chr10 41486685 41491271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03060 1 1017 Histidine Kinase Gene Family AT5G10720 57.240 0.0 1102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu10g03060 HATPase_c 6.6e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03060 - - gmx:100819520 1689.47