Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03054 ATGGCTTCCAAGCTCTGTGACTCATGCAAGTCCGCCACCGCCACCTTGTACTGCCGTCCCGACGCCGCCTTCCTATGTGGCGCCTGCGATTCCAAGGTCCACGCCGCCAACAAGCTTGCCTCGCGCCACCCACGCGTTGCGCTCTGCGAGGTATGCGAGCAGGCGCCCGCGCACGTCACCTGCAAGGCTGACGCCGCCGCGCTCTGCCTCGCCTGCGACCGTGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGTCTCCCTGTCGCGCCCTTCTACGAGTCCGTACACTCGGTCAAGGCCTCCTCGCCTATCAACTTTCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGATGTCAGCACCGAGGAGGCCGAGGCCGCGTCGTGGTTGTTACCTACTCCTAAAACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAATCCGAACCCGTTCCTTACATAGATCTGGACTATGCCGTCGCGGATCCGAAAGCGGATCCGAAAGGCTCTGCTACCGCCGACGGCGTGGTTCCGGTGCAGAGCAACTACGAGCCGTTCGCCTACGGTTACAAATACAATTCCACCACTCTCTCGCAGTCACAGTCTCAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGAAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCCGCGGTGACAGTGACGGCTCAGTTTTCGGCGGCAGATAGGGAGGCAAGAGTGTTGAGGTACCGGGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACAATTCGTTATGCTTCAAGAAAAGCGTATGCAGAAACGAGACCAAGGATCAAAGGCAGGTTCGCTAAACGTTCTGATGCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGCTGA 933 0.5874 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVAPFYESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPTPKTDLNSSQYLFSESEPVPYIDLDYAVADPKADPKGSATADGVVPVQSNYEPFAYGYKYNSTTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDADPLAGYGVVPSC 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03054 310 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Vimu10g03054 310 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Vimu10g03054 310 CDD Bbox1_BBX-like 5 48 - -
Vimu10g03054 310 Pfam CCT motif 253 295 IPR010402 GO:0005515
Vimu10g03054 310 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vimu10g03054 310 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vimu10g03054 310 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vimu10g03054 310 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 298 IPR045281 GO:0009909
Vimu10g03054 310 ProSiteProfiles CCT domain profile. 253 295 IPR010402 GO:0005515
Vimu10g03054 310 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03054 Vimu-Chr10 41448407 41449439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03054 1 309 C2C2-CO-like Transcription Factor Family AT5G24930 52.785 2.87e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu10g03054 zf-B_box 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03054 - - gmx:100794431 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03054 10 41448407 41449439 Vimu10g03054 10 41448407 41449439 ECH