Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03053 AGAGTATATTGCAGTAGTAATATGAGCTTTCTCAATTCAATTTTATCTGCTCCAACCCAGGTTCAAAATTCCCAGGATGCAATTGTGAGCGGTGGGGGTCTAAGTCATAATGGAAAATTCAGCTATGGGTATGCTAGCTCTCCCGGCAAGAGATCTTCAATGGAAGATTTTTACGACACAAGAATTGATGGTGTTAATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTACGTCAAAAAAAACTTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATATCTGATGCATATAATCATACCGATTCTGAGTTTCTGAAGTCAGAAAAGAACCAAAATAAAGATGCTGGTTCAACTGCTTCCACTGCGATTTTAGTTGGTGATCGCTTGCTTGTTGCAAATGTTGGAGATTCCAGAGCTGTCATATGTAGGGGTGGTAATGCTATTGCTGTTTCTCGAGACCACAAACCAGACCAAACTGATGAGAGGCAGAGGATTGAAGAGGCAGGAGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGAGCGTTTGGTGATAGACTCTTAAAGCAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGACAAGTCCCTGGAGTTTCTTATCCTAGCTAGTGATGGACTATGGGATGTTGTCTCAAATGAGGAAGCAGTTACTATGATTAAACCAATTGATGATGCTGAAGAAGCAGCAAAGAGGTTGATGCAAGAAGCATATGGGAGAGGTAACCATGGCACTTCTTCTCATGATAGTTCTGGAGGTAACCAGGGCATTTCTCATGGTGGTTCTGGAGGTAACCATGGTACTTCTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCACATGGTAGTTCCGATGGTAACTATGGCATTTCTCATGGTGGTTTTGGAGGTAACCGTGACACTTCTTCTATTGGTAGTTCTGGAGGTAACCATGGCACTTCCCATGATAGTTCTCGAGCTAACCATGGCATTTCTCATGGTGGTTCTGAAGGTAACCAAAGCAATTCTTCTCATGGTAATTCTGGAGGTAATCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCTTGGTACTTCTCATGGTAATTCTGGAGGTAACCATGACACTTCCCATGGTAGTTCTGGAGGTAACCAGGGCATTTCTTATGGTGGCTCTGGAGGTAACCGTGGTACTTCTTCTCATGGTAGCTCTGGAGGTAACCAAGGCGCTTCTTCTCATGGTAGTTCTGGAGGTGTTAATAAGAACCCTCCGAAAGCTGGTTATAAGTGA 1374 0.433 RVYCSSNMSFLNSILSAPTQVQNSQDAIVSGGGLSHNGKFSYGYASSPGKRSSMEDFYDTRIDGVNGEVVGLFGVFDGHGGARAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSEKNQNKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDKSLEFLILASDGLWDVVSNEEAVTMIKPIDDAEEAAKRLMQEAYGRGNHGTSSHDSSGGNQGISHGGSGGNHGTSSHGSSGGNHGTSHGSSDGNYGISHGGFGGNRDTSSIGSSGGNHGTSHDSSRANHGISHGGSEGNQSNSSHGNSGGNHGTSHGSSGGNLGTSHGNSGGNHDTSHGSSGGNQGISYGGSGGNRGTSSHGSSGGNQGASSHGSSGGVNKNPPKAGYK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03053 457 CDD PP2Cc 40 283 IPR001932 -
Vimu10g03053 457 MobiDBLite consensus disorder prediction 273 457 - -
Vimu10g03053 457 MobiDBLite consensus disorder prediction 274 322 - -
Vimu10g03053 457 PANTHER PROTEIN PHOSPHATASE 33 275 IPR015655 GO:0004722|GO:0006470
Vimu10g03053 457 MobiDBLite consensus disorder prediction 331 447 - -
Vimu10g03053 457 ProSiteProfiles PPM-type phosphatase domain profile. 41 291 IPR001932 -
Vimu10g03053 457 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Vimu10g03053 457 Gene3D - 33 284 IPR036457 -
Vimu10g03053 457 SUPERFAMILY PP2C-like 35 277 IPR036457 -
Vimu10g03053 457 SMART PP2C_4 31 342 IPR001932 -
Vimu10g03053 457 Pfam Protein phosphatase 2C 70 277 IPR001932 -
Vimu10g03053 457 FunFam probable protein phosphatase 2C 59 33 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03053 Vimu-Chr10 41436504 41440287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03053 8 276 PP2C-type Phosphatase Gene Family AT4G31750 86.989 1.42e-172 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03053 K17506 - vra:106761292 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03053 10 41436504 41440287 Vimu10g03053 10 41436504 41440287 ECH