Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03049 ATGAAGATTGCGGTGGAAGGGTGCATGCACGGCGACCTGGACAACGTGTACAGAACCCTTCAGCACTTGGAGAAATCCCAGAACACGAAAATCGACCTTCTCCTCTGCTGCGGCGATTTCCAAGCGGTTAGGAACGAACAGGATTTGAAGAGCTTGAACGTCCCGCCCAAGTATCGCTCCATGAATTCCTTCTGGAAGTACTATTCCGGCGCCGAGGTTGCCCCTTACGCCACCATCTTCATCGGCGGGAATCACGAAGCGTCCAATTATCTCTGGGAACTGTACTATGGAGGATGGGTTGCTCCTAATATCTACTTCTTGGGAGCTGCTGGGGTCGTGAGGTTTGGGAATGTTCGAATTGGTGGTCTCTCTGGGATCTATAATGATCGACACTATAGATTAGCAGGACGTTTTGAGAGGCCTCCCTATGATCAGAGTACCATTAGGTCTGTGTATCATGTTCGTGAGTATGATGTTCGCAAACTAATGGAACTTAAGGAGCCCATTGATGTTTTTCTTTCGCATGATTGGCCACTTAGAATCACTGATTATGGGGATTGGAAGGAGCTTGTTCGGCGCAAGCACTATTTTAGGCAAGAGGTGGGGCTTGTTGAAATTTTTGAACTTAATGAATCTGCCAGAGCTTATATTTGTCAGATAGAGGAAAAAAGATTAGGGAGTAAAGCTGCTGCTGAACTTCTAGAAAAACTGAAACCAAATTATTGGTTTTCGGCTCACTTACACTGCAAGTTTGCTGCTCTGGTTCAGCATGGGGAAGGAGGTCCACTGACAAAATTCCTTGCACTGGACAAATGTATTGCCGGGCGTGATTTCTTACAGATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTAGCGATAACACGGAGGTTCAACCCTATCTTCCCTTTGACTACCAAAGGTGCAAACTTCAGAGGTTTAAATCTCGAGATGGAAGATTGTCTTGAATGGGTTAGAAGCAGGCTGCGTGAGAAGGGGTGCAAACCATTTGAATTTGTCAGAACAGCTCCTTCCTATGATCCTTCACGGTCCAACTTTGGTGGTGCTTTGACTGTGAATCCCCGGAACCCTCAGACAGAATCTTTTTTGCAGCTTCTGGAACTTCCATATCTTCTTGATAGAAATCCTGATGCAAAGGACTTTTCACCTCATCCTTCTCTTTCAGTTAAAAGAGGCATTAGTGATGATAATGAGGACATTCCCATTGATGATGTGGATGATGATGATGATGATGATGTAGAACTCCCAAAAGTTGATAACGGTTCCCTCTCTTTCAACTTCTATGCAGATTCATGCCCATCAGCTGAGTTAATCATAAGAGACACAGTTAGCTCATTCTCTTCTACCGATCCTTCTATTCCTGGAAAGCTCCTTCGCTTGGTTTTCCATGATTGCTTTGTGGAGGGATGTGATGCCTCTTTGATGCTGCAAGGGAACAATACAGAACAAAGTGATCCGGGAAATAGATCTGTTGGAGGATTTTCAGTGATAGATTCAGCAAAAAGGGTCCTTGAGAAATTCTGCCCTGGAACTGTTTCTTGTGCGGACATAATAGCTATTGCTGCCAGAGATGCTGTCGAAATAGCTGGTGGACCTAGAATTATGATTCCTACAGGTAGGAGAGATGGGATGGTTTCACTTGCTTCAAATGTCAGACCCAACATTGTGGATACCAGTTTTTCAATGGATGAGATGGTTCAACTCTTTGCCACTAAAGGATTATCCTTACTTGATCTTGTAGTCCTTTCAGGAGCTCATAGCATAGGCACAGCACATTGCAGCTCATTCAGGGATCGTTTTGAAGAAGATTCAAGGGGAAAGCTTATGGTGGCTGACAAAAGCCTTGACAGTGAGTATGCTAAAGTGCTGATGGAAGAATGTCCATCTGGTGTACAACCATCTGTAAAGGTGAACAATGATCCTCAAACATCTTTGGTCTTTGACAACATGTACTACCAAAATCTTCTGGCTCACAAGGGCCTCTTCCAATCAGATTCTGTTCTCATAAGCAATGATAGCACAAGGATATTAGTGCAGGATTTTGCAAATGATCAAGACCTTTTCTTTCAAAATTGGGCTCAGTCCTTCTTGAAGCTCACCAGTGTTGGAGTCAAATCTGGTAATGTGGGTGAAATTAGAATATCTTGTGCATCGACTAATGCATAA 2211 0.4378 MKIAVEGCMHGDLDNVYRTLQHLEKSQNTKIDLLLCCGDFQAVRNEQDLKSLNVPPKYRSMNSFWKYYSGAEVAPYATIFIGGNHEASNYLWELYYGGWVAPNIYFLGAAGVVRFGNVRIGGLSGIYNDRHYRLAGRFERPPYDQSTIRSVYHVREYDVRKLMELKEPIDVFLSHDWPLRITDYGDWKELVRRKHYFRQEVGLVEIFELNESARAYICQIEEKRLGSKAAAELLEKLKPNYWFSAHLHCKFAALVQHGEGGPLTKFLALDKCIAGRDFLQIVEIESDAGPYEIQYDEEWLAITRRFNPIFPLTTKGANFRGLNLEMEDCLEWVRSRLREKGCKPFEFVRTAPSYDPSRSNFGGALTVNPRNPQTESFLQLLELPYLLDRNPDAKDFSPHPSLSVKRGISDDNEDIPIDDVDDDDDDDVELPKVDNGSLSFNFYADSCPSAELIIRDTVSSFSSTDPSIPGKLLRLVFHDCFVEGCDASLMLQGNNTEQSDPGNRSVGGFSVIDSAKRVLEKFCPGTVSCADIIAIAARDAVEIAGGPRIMIPTGRRDGMVSLASNVRPNIVDTSFSMDEMVQLFATKGLSLLDLVVLSGAHSIGTAHCSSFRDRFEEDSRGKLMVADKSLDSEYAKVLMEECPSGVQPSVKVNNDPQTSLVFDNMYYQNLLAHKGLFQSDSVLISNDSTRILVQDFANDQDLFFQNWAQSFLKLTSVGVKSGNVGEIRISCASTNA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03049 736 SMART DBR1_2 255 387 IPR007708 GO:0006397|GO:0016788
Vimu10g03049 736 SUPERFAMILY Metallo-dependent phosphatases 1 260 IPR029052 -
Vimu10g03049 736 Pfam Lariat debranching enzyme, C-terminal domain 264 384 IPR007708 GO:0006397|GO:0016788
Vimu10g03049 736 Gene3D - 9 282 IPR029052 -
Vimu10g03049 736 ProSiteProfiles Plant heme peroxidase family profile. 437 735 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 FunFam Lariat debranching enzyme 9 271 - -
Vimu10g03049 736 PRINTS Plant peroxidase signature 526 536 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 592 604 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 669 686 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 545 560 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 507 520 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 653 668 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 447 466 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 709 722 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Plant peroxidase signature 471 491 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 FunFam Peroxidase 571 714 - -
Vimu10g03049 736 ProSitePatterns Peroxidases proximal heme-ligand signature. 593 603 IPR019793 -
Vimu10g03049 736 FunFam Peroxidase 441 582 - -
Vimu10g03049 736 PRINTS Haem peroxidase superfamily signature 545 557 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Haem peroxidase superfamily signature 527 544 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Haem peroxidase superfamily signature 469 483 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Haem peroxidase superfamily signature 593 608 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 PRINTS Haem peroxidase superfamily signature 655 670 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 CDD secretory_peroxidase 438 731 IPR033905 GO:0004601|GO:0042744
Vimu10g03049 736 Pfam Calcineurin-like phosphoesterase 1 249 IPR004843 GO:0016787
Vimu10g03049 736 PANTHER RNA LARIAT DEBRANCHING ENZYME 1 425 - -
Vimu10g03049 736 SUPERFAMILY Heme-dependent peroxidases 438 735 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu10g03049 736 CDD MPP_Dbr1_N 3 279 IPR041816 -
Vimu10g03049 736 Gene3D Peroxidase, domain 2 571 714 - -
Vimu10g03049 736 MobiDBLite consensus disorder prediction 396 426 - -
Vimu10g03049 736 Gene3D - 441 735 - -
Vimu10g03049 736 Pfam Peroxidase 455 699 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03049 Vimu-Chr10 41383520 41390054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03049 435 735 Peroxidase AT4G31760 61.130 2.08e-136 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03049 K18328 - cave:132189503 990.719