Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03045 ATGGGAATATATCTCAGCACTCCCAAAGTTGAAAAGTTTTCCGAAGATGGTGAAAATGAGCATCTTAGATATGGTTTGTCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTAATCTGGATGATTCAACTTCATTTTTTGGTGTCTACGATGGTCATGGAGGTAAGGTGGTTGCGAAGTTTTGTGCGAAGTTTCTCCACCAAGAGGTGCTCAAAAGTAAAGCATACTTAACAGGAGATATAGGAACCTCTCTTCAGAAATCCTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGAGAATTATCAATATTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGTTTGATTTGGTCTCCAAGAAGCAGTGATGGTAATTGCCAAGTTGATGAGTGGGCTTTTGAGGAGGGCCCTCATTCTGATTTTGCTGGACCAACTTCGGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTTTTGTTGCAAATGCTGGTGATTCGCGATGTGTGATATCTCGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGACATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCACGCTGGACGAGTTAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAGAAACAAATTTTAACTGCCAATCCAGACATAAACACTGTTGAGCTTTGTGACGAAGATGAATTTGTGGTGTTAGCTTGTGATGGCATATGGGATTGCATGTCAAGTCAACAACTAGTAGATTTTATTCATACCAAATTGTACACGGAAACCAAACTTTCCGCCGTGTGTGAATTAGTACTTGACCGGTGTTTGGCACCATCAACTGCCGTTGGCGAGGGATGTGACAATATGACCATGATCTTGGTGCAGTTCAAAAGACCTGCTCAGTCCAGTGCATCAACAGAAGAGCAATCCTCTTCAACCGGACAAGCTGAACCTGAAACAACTAGAGAGAAGTGA 1074 0.4162 MGIYLSTPKVEKFSEDGENEHLRYGLSSMQGWRATMEDAHAAYTNLDDSTSFFGVYDGHGGKVVAKFCAKFLHQEVLKSKAYLTGDIGTSLQKSFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSDGNCQVDEWAFEEGPHSDFAGPTSGSTACVAVIRNNQLFVANAGDSRCVISRKGQAYNLSRDHKPDLDIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQILTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFIHTKLYTETKLSAVCELVLDRCLAPSTAVGEGCDNMTMILVQFKRPAQSSASTEEQSSSTGQAEPETTREK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03045 357 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vimu10g03045 357 Pfam Protein phosphatase 2C 153 313 IPR001932 -
Vimu10g03045 357 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Vimu10g03045 357 CDD PP2Cc 23 329 IPR001932 -
Vimu10g03045 357 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vimu10g03045 357 MobiDBLite consensus disorder prediction 333 350 - -
Vimu10g03045 357 SMART PP2C_4 13 327 IPR001932 -
Vimu10g03045 357 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Vimu10g03045 357 Gene3D - 1 330 IPR036457 -
Vimu10g03045 357 MobiDBLite consensus disorder prediction 333 357 - -
Vimu10g03045 357 PANTHER PROTEIN PHOSPHATASE 2C 23 328 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03045 Vimu-Chr10 41349120 41354471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03045 1 341 PP2C-type Phosphatase Gene Family AT2G25070 76.246 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03045 K17499 - gmx:100787778 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03045 10 41349120 41354471 Vimu10g03045 10 41349120 41354471 ECH
Vimu1g02757 1 39818555 39823273 Vimu10g03045 10 41349120 41354471 PCT