Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03033 ATGGCTGAAAAGGTGGAAATGCTTGAAGCAAAGGTGCAACATATGAAAGAGCAGAATCGTACTCTACGAATGATGCTGGAAATTATGAGCAAGAAATGCCAGAAGCTGCAACTTCATGTTCAAGAGATGAACAATGCAGAAGGCAGCAATTCTGGCCAAAGTGAGTTTTCCACAGCACAAAAGGCATCGCAAATCTTTGTTAAAATCCACCCGAACGACAATAGTTTGATGGTAAAAGATGGTTATGAGTGGAAGAAGTATGGGCACAAGAAGACAACGAAAGACAATCCTTCACCCAGAGCTTATTACAAGTGCGCATTGGCTCCTACATGCCCCGTCAAGAAAAAGGTGCAAAGAAGCATACAGGATAAGTCTGTCGTTGTTGCAACTTACGAAGGAAAGCATAACCACGGTTTTCCTTTTCGTGATTTATTCAAGCCATCGTCGGCTACACCCGAAGCCTCAATAATGGATAACGATTTACCTATGACAAACATATCAAACGACATCAACATCGACCTTTGTCTATGCAATCGTGTTCCGACAGATGTAACAGATAAACAGCAGAAGGACGGTGGCAGTAACATTAAAGTTCTGGAATATGTAAATTCTCTGCTAAAAGATCCTAATTTCATCGCACCATTAGCTGAAGCAGTTGTTCTCTCCATCAATAGCCAGAGTGAGCAAGTGGGTCTTAACCTGAGTTTGGGTCTTCCTCAATCGGATTTGTCTAAGTGA 738 0.4201 MAEKVEMLEAKVQHMKEQNRTLRMMLEIMSKKCQKLQLHVQEMNNAEGSNSGQSEFSTAQKASQIFVKIHPNDNSLMVKDGYEWKKYGHKKTTKDNPSPRAYYKCALAPTCPVKKKVQRSIQDKSVVVATYEGKHNHGFPFRDLFKPSSATPEASIMDNDLPMTNISNDINIDLCLCNRVPTDVTDKQQKDGGSNIKVLEYVNSLLKDPNFIAPLAEAVVLSINSQSEQVGLNLSLGLPQSDLSK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03033 245 Coils Coil 5 46 - -
Vimu10g03033 245 Gene3D WRKY domain 62 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g03033 245 SMART WRKY_cls 78 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g03033 245 ProSiteProfiles WRKY domain profile. 73 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g03033 245 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 63 IPR044810 GO:0003700
Vimu10g03033 245 SUPERFAMILY WRKY DNA-binding domain 74 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g03033 245 Pfam WRKY DNA -binding domain 79 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03033 Vimu-Chr10 41242525 41244459 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03033 60 220 WRKY Transcription Factor Family AT1G80840 45.143 3.40e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g03033 WRKY 2.8e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03033 - - var:108330510 447.203