Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03031 ATGTCCCTTGATTCCGAAGCAAATCTTTCTTCCATGGAACCAACTTGTGTCGACACTTCTCTCAACCTTAACGTTATTCCCTCTTCACACACGGACATCGCGGGAGAAGTTTTGGTTGAAGAGTTGCGGCGTTTAAACTGTGAGAACAAGATGCTAACTGCGACGCTGAACCACGTATACGAGAACTATCTTGCTTTGCAGAAACATTTGAGTGAGTTCAACAGACTGAAGAATGCAAATTTTGAGAAAGAAGAAACAGCATCGCTGAAAAGAAAGGTTGACAGTGAGAATTGCTCGAATCTGTTTTGCGTCAACGCACTCACAGAGTGCAGCAGTGAGGAAGAGACGTTCAAAAAGCCTAAGCAAAGTACCACCCCAAAGGTTCACAAAGTTTTTGTACGGACAGATGCATCTGATACCAGCTTGTATGTGAGGGACGGATATCAGTGGAGAAAATATGGTCAAAAAGTGACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCCTATGCTCCGGGCTGTCCAGTGAAGAAGAAGGTGCAGAGAAGCATGGAGGATCCAAGTGTGTTGGTGACAACGTACGAAGGAGAACACAATCATGGCGAACATCAAACTGAGATATCGGGGAATTCAGGGAAAAGTGAAAGTGGGGAAGCGCTAGAATTGGTCCAGTCAAGAGTGGTTGACATGAATGGGCAAAAGTCGTTGATCCAGCAGTTTTTAGTTCAACAAATGGCTAATTCTTTGACCAGAGATCCTAATTTCACTGCAGCACTTGCTTCTGCCATCTCAGGAAATCTACATCATACTTCTACGCCAAAACGTTGA 834 0.4436 MSLDSEANLSSMEPTCVDTSLNLNVIPSSHTDIAGEVLVEELRRLNCENKMLTATLNHVYENYLALQKHLSEFNRLKNANFEKEETASLKRKVDSENCSNLFCVNALTECSSEEETFKKPKQSTTPKVHKVFVRTDASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPGCPVKKKVQRSMEDPSVLVTTYEGEHNHGEHQTEISGNSGKSESGEALELVQSRVVDMNGQKSLIQQFLVQQMANSLTRDPNFTAALASAISGNLHHTSTPKR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03031 277 SUPERFAMILY WRKY DNA-binding domain 141 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g03031 277 MobiDBLite consensus disorder prediction 197 219 - -
Vimu10g03031 277 ProSiteProfiles WRKY domain profile. 146 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g03031 277 Gene3D WRKY domain 127 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g03031 277 FunFam WRKY transcription factor 40 129 206 - -
Vimu10g03031 277 SMART WRKY_cls 144 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g03031 277 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 233 269 IPR044810 GO:0003700
Vimu10g03031 277 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03031 Vimu-Chr10 41230216 41231469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03031 17 271 WRKY Transcription Factor Family AT1G80840 43.945 1.05e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g03031 WRKY 8.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03031 - - gmx:100127373 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02746 1 39681711 39683345 Vimu10g03031 10 41230216 41231469 PCT