Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03028 ATGGAAGAGTGTCAGACGGTGTTCGGAAAATACGAGTTGGGGAGGCTTCTAGGGAAGGGGACGTTTGCCAAAGTGTATTATGGGAAGCAAATAAGCACGGGCGAGAGCGTGGCGATCAAAGTAATGAGCAAAGAGCAGGTGCGGAAGGAAGGAATGATGGAACAGATCAAACGCGAAATCTCCGTTATGCGTTTGGTGCGACATCCAAACGTTGTCGAACTCAAGGAGGTCATGGCCACAAAGACTAAAATCTTCTTCGTCATGGAATACGTCCGTGGCGGCGAACTCTTCACCAAAATCTCCAAAGGCAAACTCAAAGAAGATCAGGCCCGCAAATATTTCCAGCAATTGATCAGCGCCGTTGATTACTGCCACAGCAGAGGGGTCTCCCATCGCGATCTCAAACCCGAGAATCTCCTCCTCGACGACGACGAAAACCTCAAAATCTCCGACTTCGGTCTGTCTGCGCTGCCCGAACAGCTTCGTTACGACGGACTCCTCCACACGCAGTGCGGGACCCCTGCCTACGTGGCGCCGGAAGTCTTGAGAAAAAAAGGATACGACGGTTCAAAAGCCGATATCTGGTCCTGCGGCGTCGTTCTCTACGTTCTTCTCGCTGGCTTTCTCCCCTTCCAACACGAGAATCTGATGACCATGTATAACAAAGTCCTCAGAGCGGAATTCGATTTCCCCCCTTGGTTTTCTCCCGAGTCAAAGAGGTTGATCTCCAAGATTCTCGTGGCCGACCCTGCCAAGAGAACCTCCATTTCCGCCATCACGCGCGTCCCCTGGTTCCGCAAAGGCCTTCCCTTGTCCTCCGTCGCCGACACGTGTCAGGTCGACAAGCAAGAGACGGTCACGGAAGAGGCTAATAACAATTCCAAGGTTCCCAAGTTCTTCAACGCCTTCGAGTTCATCTCCTCCATGTCGTCGGGCTTTGATCTCTCGGGCCTGTTCGAGACCAAGCGGAAGACGGCCGCGGTGTTCACCTCCAAGTGTTCCGCGGTGTCGATTATGGCCAAGATCGCCTCGGCGGCCAGGGGGCTGAGTTTCACGGTTGCGGAGGTGAAGGACTTCAAGATCCGGCTCCAGGGGTCGGCCGTGGGAAGGAAGGGGCGGCTCGCGATCACGGCGGAGGTGTTCGAGGTGGCGCCAGAGGTGGCCGTGGTGGAGTTTTCGAAGTCCGCCGGCGATACCTTGGAATACGCGAAGTTTTGCGACGAAGATGTTAGGCCCGCGCTGAAAGACATTGTCTGGACGTGGCAAGGGGATGCCACGTGCGCTGTTAACGTCCCCGGCTGTCACAGTGAGGAGTGTCAAAAGCAGGTCGTAAGCAGCGTATAA 1344 0.5499 MEECQTVFGKYELGRLLGKGTFAKVYYGKQISTGESVAIKVMSKEQVRKEGMMEQIKREISVMRLVRHPNVVELKEVMATKTKIFFVMEYVRGGELFTKISKGKLKEDQARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDDDENLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKKGYDGSKADIWSCGVVLYVLLAGFLPFQHENLMTMYNKVLRAEFDFPPWFSPESKRLISKILVADPAKRTSISAITRVPWFRKGLPLSSVADTCQVDKQETVTEEANNNSKVPKFFNAFEFISSMSSGFDLSGLFETKRKTAAVFTSKCSAVSIMAKIASAARGLSFTVAEVKDFKIRLQGSAVGRKGRLAITAEVFEVAPEVAVVEFSKSAGDTLEYAKFCDEDVRPALKDIVWTWQGDATCAVNVPGCHSEECQKQVVSSV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03028 447 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03028 447 FunFam Non-specific serine/threonine protein kinase 4 299 - -
Vimu10g03028 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 415 - -
Vimu10g03028 447 Gene3D Kinase associated domain 1, KA1 295 420 - -
Vimu10g03028 447 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Vimu10g03028 447 CDD STKc_SnRK3 10 264 - -
Vimu10g03028 447 ProSiteProfiles NAF domain profile. 295 320 IPR018451 GO:0007165
Vimu10g03028 447 Gene3D Transferase(Phosphotransferase) domain 1 91 269 - -
Vimu10g03028 447 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Vimu10g03028 447 SUPERFAMILY Protein kinase-like (PK-like) 7 281 IPR011009 -
Vimu10g03028 447 Pfam NAF domain 297 354 IPR004041 GO:0007165
Vimu10g03028 447 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vimu10g03028 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vimu10g03028 447 CDD CIPK_C 301 415 - -
Vimu10g03028 447 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03028 447 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03028 447 FunFam Non-specific serine/threonine protein kinase 295 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03028 Vimu-Chr10 41188340 41191096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03028 2 424 CBL-interacting serine-threonine protein kinases AT5G25110 68.981 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu10g03028 Pkinase 1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03028 - - gmx:100817520 789.26